miRNA display CGI


Results 141 - 160 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 47290 0.66 0.872429
Target:  5'- uGCUCAUGcACgACgACGccgucucgcGCGCCGCGg -3'
miRNA:   3'- -CGGGUACaUGgUGgUGUa--------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 47597 0.66 0.865019
Target:  5'- gGCCgGcgcGcGCUACCGCGUGCGCUGg- -3'
miRNA:   3'- -CGGgUa--CaUGGUGGUGUACGCGGCgc -5'
23705 3' -56.9 NC_005261.1 + 48033 0.67 0.789711
Target:  5'- aCCUGUGcuUCACCACgcucGUGCGCgGCGa -3'
miRNA:   3'- cGGGUACauGGUGGUG----UACGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 49550 0.66 0.841556
Target:  5'- gGCCCGgcgucgGCUACCugGgccGCGCCucGCGg -3'
miRNA:   3'- -CGGGUaca---UGGUGGugUa--CGCGG--CGC- -5'
23705 3' -56.9 NC_005261.1 + 49608 0.72 0.550694
Target:  5'- gGCCCug--GCCGCCg---GCGCCGCGc -3'
miRNA:   3'- -CGGGuacaUGGUGGuguaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 49789 0.66 0.841556
Target:  5'- gGCCCGgcgGcGCCACgGuCGUGaCGCUGCu -3'
miRNA:   3'- -CGGGUa--CaUGGUGgU-GUAC-GCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 50144 0.67 0.789711
Target:  5'- -gCCGUGUccuccuuCCGCUuCAUcGCGCCGCGc -3'
miRNA:   3'- cgGGUACAu------GGUGGuGUA-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 50476 0.68 0.765554
Target:  5'- -aCCGUGUgucuGCCGCCACccggggccuggagccGcGCGCCGCc -3'
miRNA:   3'- cgGGUACA----UGGUGGUG---------------UaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 51473 0.68 0.742541
Target:  5'- aCCCGcGU-CCACCGCcgcCGCCGCGc -3'
miRNA:   3'- cGGGUaCAuGGUGGUGuacGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 51682 0.69 0.692962
Target:  5'- cGCCCAgcgcGUccagcuucGCCGCCuCGUcCGCCGCGc -3'
miRNA:   3'- -CGGGUa---CA--------UGGUGGuGUAcGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 52139 0.66 0.865019
Target:  5'- aGCgUCGUGUGCgCGCaCGCGUGCcggucGUCGCGc -3'
miRNA:   3'- -CG-GGUACAUG-GUG-GUGUACG-----CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 52459 0.67 0.816385
Target:  5'- uGCUC-UGgaugGCgGCCAgG-GCGCCGCGg -3'
miRNA:   3'- -CGGGuACa---UGgUGGUgUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 52743 0.69 0.679818
Target:  5'- gGUCCAUGaagcGCCGCCGCAgcacgggcuggaacUGCG-CGCGa -3'
miRNA:   3'- -CGGGUACa---UGGUGGUGU--------------ACGCgGCGC- -5'
23705 3' -56.9 NC_005261.1 + 52860 0.68 0.771206
Target:  5'- cGUCCAUGUcgcgcgcgggcgGCUccgucugcggcGCCGCGagguucgGCGCCGCGa -3'
miRNA:   3'- -CGGGUACA------------UGG-----------UGGUGUa------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 53547 0.73 0.482401
Target:  5'- gGCCCAgc-ACCACCGCGg--GCCGCGu -3'
miRNA:   3'- -CGGGUacaUGGUGGUGUacgCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 53738 0.68 0.761763
Target:  5'- uGUCCcgGcUGgCGCCGCccGCGCcCGCGg -3'
miRNA:   3'- -CGGGuaC-AUgGUGGUGuaCGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 54230 0.73 0.482401
Target:  5'- cGCCCc--UGCCACCACcgcCGCCGCGc -3'
miRNA:   3'- -CGGGuacAUGGUGGUGuacGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 54708 0.66 0.865019
Target:  5'- cGCgCAgcgcGCCGCCGaggcgGCGCCGCa -3'
miRNA:   3'- -CGgGUaca-UGGUGGUgua--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 54807 0.69 0.692962
Target:  5'- cGCCCGcg-GCCGCCAgCAgcGCGUCGCu -3'
miRNA:   3'- -CGGGUacaUGGUGGU-GUa-CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 55210 0.66 0.865019
Target:  5'- aGCUCG-GUGCgCAcCCGCA-GCuGCCGCGu -3'
miRNA:   3'- -CGGGUaCAUG-GU-GGUGUaCG-CGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.