miRNA display CGI


Results 161 - 180 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 55585 0.67 0.816385
Target:  5'- cGCCgCG---GCCACCuGCAgccgGUGCCGCGc -3'
miRNA:   3'- -CGG-GUacaUGGUGG-UGUa---CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 56261 0.67 0.824953
Target:  5'- cGUCCGaggcgcgguUGU-CCACCAcCGUGC-CCGCGc -3'
miRNA:   3'- -CGGGU---------ACAuGGUGGU-GUACGcGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 56882 0.68 0.780525
Target:  5'- gGCgCGcGcGCCGCCGCcgGCGCCagGCGc -3'
miRNA:   3'- -CGgGUaCaUGGUGGUGuaCGCGG--CGC- -5'
23705 3' -56.9 NC_005261.1 + 56918 0.68 0.752205
Target:  5'- gGCCCAc--GCCGCCcagaGCA-GgGCCGCGg -3'
miRNA:   3'- -CGGGUacaUGGUGG----UGUaCgCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 57360 0.7 0.65233
Target:  5'- gGUCCGUGUACUgguucgugaugGCCGCGUacGUGCUGCc -3'
miRNA:   3'- -CGGGUACAUGG-----------UGGUGUA--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 57564 0.7 0.621656
Target:  5'- aGCgCCGUGUACCcucguCCGuCGUGUgccaGCCGCGc -3'
miRNA:   3'- -CG-GGUACAUGGu----GGU-GUACG----CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 58289 0.71 0.601233
Target:  5'- cGCgCCGcgGUACCgGCUugG-GCGCCGCGg -3'
miRNA:   3'- -CG-GGUa-CAUGG-UGGugUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 60209 0.67 0.814651
Target:  5'- aGCCCGgg-GCCauuGCCACuguggacgccaGCGCCGUGg -3'
miRNA:   3'- -CGGGUacaUGG---UGGUGua---------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 60404 0.71 0.591052
Target:  5'- cGCCCGUgccGUGCCuGCCGCAgcagcaGCaGCCGCc -3'
miRNA:   3'- -CGGGUA---CAUGG-UGGUGUa-----CG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 60850 0.68 0.752205
Target:  5'- uGCCgGgcugGUacggcGCCGCCGCcagugGCGCCGCc -3'
miRNA:   3'- -CGGgUa---CA-----UGGUGGUGua---CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 61341 0.66 0.841556
Target:  5'- gGCCCucg-GCgACCGCGccuggccgGUGCCGCGc -3'
miRNA:   3'- -CGGGuacaUGgUGGUGUa-------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 61419 0.68 0.742541
Target:  5'- aGCCUGUGUgGCCcccuuCCGCcgGCucucGCCGCGc -3'
miRNA:   3'- -CGGGUACA-UGGu----GGUGuaCG----CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 61488 0.66 0.857399
Target:  5'- cGCCCAcGUcGCgCugUGCGUGCugggccGCCGCGu -3'
miRNA:   3'- -CGGGUaCA-UG-GugGUGUACG------CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 61625 0.66 0.862755
Target:  5'- cCCCGcGUucuucggcgcggacGCCcCCGCGcugGCGCCGCGc -3'
miRNA:   3'- cGGGUaCA--------------UGGuGGUGUa--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 62199 0.72 0.540728
Target:  5'- gGCCUGggcGUGCUgaugcagcaGCCGCGccUGCGCCGCGc -3'
miRNA:   3'- -CGGGUa--CAUGG---------UGGUGU--ACGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 62285 0.69 0.703016
Target:  5'- aGCUgGaGaACCGCCACc-GCGCCGCGc -3'
miRNA:   3'- -CGGgUaCaUGGUGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 62380 0.72 0.550694
Target:  5'- cGCCC-UGg--CGCCGCGcaGCGCCGCGg -3'
miRNA:   3'- -CGGGuACaugGUGGUGUa-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 62676 0.67 0.788799
Target:  5'- cGCCacgGUcgacGCCAUCACcgcgcugcuccugGUGCGCCGCc -3'
miRNA:   3'- -CGGguaCA----UGGUGGUG-------------UACGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 63336 0.7 0.631883
Target:  5'- gGCCaugGUGUA-CACCGCGcGCGCCgGCGg -3'
miRNA:   3'- -CGGg--UACAUgGUGGUGUaCGCGG-CGC- -5'
23705 3' -56.9 NC_005261.1 + 63949 0.66 0.865019
Target:  5'- cGCCCccccggcgggggGUGggggcGCCGCCcCcgGCGCgGCGu -3'
miRNA:   3'- -CGGG------------UACa----UGGUGGuGuaCGCGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.