miRNA display CGI


Results 61 - 80 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 106918 0.69 0.672712
Target:  5'- gGCCUgaGUG-GCCGCCG-GUGCGCgGCGg -3'
miRNA:   3'- -CGGG--UACaUGGUGGUgUACGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 106613 0.71 0.601233
Target:  5'- cGCgCCGcgGUGCUGCCcgcggcGCAgUGCGCCGCGc -3'
miRNA:   3'- -CG-GGUa-CAUGGUGG------UGU-ACGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 106474 0.71 0.601233
Target:  5'- aCCCcgGggcGCCGCCGCuggGCucuGCCGCGg -3'
miRNA:   3'- cGGGuaCa--UGGUGGUGua-CG---CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 106391 0.76 0.305277
Target:  5'- uGCCCGUGccGCCGCgcgaguaccggcagCGCGUGCuGCCGCGg -3'
miRNA:   3'- -CGGGUACa-UGGUG--------------GUGUACG-CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 106223 0.7 0.621656
Target:  5'- gGCCgGUGUACCugGCCuGCggGCGgCGCGc -3'
miRNA:   3'- -CGGgUACAUGG--UGG-UGuaCGCgGCGC- -5'
23705 3' -56.9 NC_005261.1 + 106084 0.7 0.65233
Target:  5'- cGCCCccGccGCCGCCGCGgccgcgGCGCCcgGCGu -3'
miRNA:   3'- -CGGGuaCa-UGGUGGUGUa-----CGCGG--CGC- -5'
23705 3' -56.9 NC_005261.1 + 105989 0.68 0.780525
Target:  5'- uCCCGgagcgcGUGCCGCCGCcgGCGaCGgGa -3'
miRNA:   3'- cGGGUa-----CAUGGUGGUGuaCGCgGCgC- -5'
23705 3' -56.9 NC_005261.1 + 105001 0.7 0.662533
Target:  5'- cGCCgCAgccGCCGCCGCAgccGcCGCCGCa -3'
miRNA:   3'- -CGG-GUacaUGGUGGUGUa--C-GCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 104965 0.7 0.662533
Target:  5'- cGCCgCAgccGCCGCCGCAgccGcCGCCGCa -3'
miRNA:   3'- -CGG-GUacaUGGUGGUGUa--C-GCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 104038 0.67 0.80765
Target:  5'- gGCCgAcGggGCCgggcGCCGCGcgGCGCCGCGc -3'
miRNA:   3'- -CGGgUaCa-UGG----UGGUGUa-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 103277 0.66 0.872429
Target:  5'- aGCCCcccaGCCGCCGgcgGCGUCGCa -3'
miRNA:   3'- -CGGGuacaUGGUGGUguaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 102786 0.66 0.865019
Target:  5'- cGCCCGgcc-CCGCCGCG-GCaGCCGUu -3'
miRNA:   3'- -CGGGUacauGGUGGUGUaCG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 102665 0.68 0.761763
Target:  5'- gGCCCcgGccgagGCCACCugGgccgaaGCcaGCCGCGa -3'
miRNA:   3'- -CGGGuaCa----UGGUGGugUa-----CG--CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 101611 0.69 0.682858
Target:  5'- gGCCCGUgcGUugCGCCGagacuuUGCGCCGg- -3'
miRNA:   3'- -CGGGUA--CAugGUGGUgu----ACGCGGCgc -5'
23705 3' -56.9 NC_005261.1 + 100655 0.7 0.621656
Target:  5'- aGCCCcccGUcGCCccCCGCggGCGCCGCGc -3'
miRNA:   3'- -CGGGua-CA-UGGu-GGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 100201 0.66 0.841556
Target:  5'- gGCCUggGcgcGCCGCgGCGUGCuGCUGCu -3'
miRNA:   3'- -CGGGuaCa--UGGUGgUGUACG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 98150 0.66 0.841556
Target:  5'- gGCCCGgggGCCgugagcGCCAUGgcgGCGgCCGCGg -3'
miRNA:   3'- -CGGGUacaUGG------UGGUGUa--CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 96354 0.72 0.51122
Target:  5'- gGCCCcgucgcgGUACUgcGCCGaauCGUGCGCCGCa -3'
miRNA:   3'- -CGGGua-----CAUGG--UGGU---GUACGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 96112 0.67 0.789711
Target:  5'- cGCCCAgcaGCCGCCGCGagaUGuCGCCcaGCa -3'
miRNA:   3'- -CGGGUacaUGGUGGUGU---AC-GCGG--CGc -5'
23705 3' -56.9 NC_005261.1 + 96001 0.69 0.722934
Target:  5'- gGCCCAgcUGcGCCugCACGUGguUGgCGCGg -3'
miRNA:   3'- -CGGGU--ACaUGGugGUGUAC--GCgGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.