miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 95715 0.72 0.520986
Target:  5'- cGgCCGg--GCCGCCGCcgGCaGCCGCGc -3'
miRNA:   3'- -CgGGUacaUGGUGGUGuaCG-CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 95241 0.67 0.789711
Target:  5'- gGCCUgcGcGCCGCCgACAUcGCGgCGCGa -3'
miRNA:   3'- -CGGGuaCaUGGUGG-UGUA-CGCgGCGC- -5'
23705 3' -56.9 NC_005261.1 + 95045 0.72 0.520986
Target:  5'- gGCUCGUGUGCCuggGgCugGUGCcGCUGCGg -3'
miRNA:   3'- -CGGGUACAUGG---UgGugUACG-CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 95006 0.66 0.857399
Target:  5'- gGCCUcgcgGUGCCGgCACcguccagGCGCCGgGg -3'
miRNA:   3'- -CGGGua--CAUGGUgGUGua-----CGCGGCgC- -5'
23705 3' -56.9 NC_005261.1 + 94619 0.74 0.427285
Target:  5'- uGCUCGUGggGCgGCgCGCGgaggGCGCCGCGg -3'
miRNA:   3'- -CGGGUACa-UGgUG-GUGUa---CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 94380 0.72 0.505397
Target:  5'- aGCCCGgcuucggcgcggcgGgcgGCCGCCGCGcgGCGgCCGCGg -3'
miRNA:   3'- -CGGGUa-------------Ca--UGGUGGUGUa-CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 94090 0.66 0.857399
Target:  5'- gGgCCAgg-GCCGcugcCCGCggGCGCCGCa -3'
miRNA:   3'- -CgGGUacaUGGU----GGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 93532 0.74 0.436214
Target:  5'- aGCCgCGaGgaagagcGCCGCCGCGaGCGCCGCGg -3'
miRNA:   3'- -CGG-GUaCa------UGGUGGUGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 93409 0.67 0.824953
Target:  5'- gGCCCGggcggGCCGCCACAgGUGCU-CGa -3'
miRNA:   3'- -CGGGUaca--UGGUGGUGUaCGCGGcGC- -5'
23705 3' -56.9 NC_005261.1 + 93124 0.66 0.849576
Target:  5'- -aCCGUGc-CCGCCGcCGUGCuGCCGUa -3'
miRNA:   3'- cgGGUACauGGUGGU-GUACG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 90710 0.68 0.742541
Target:  5'- aGCgCAgcacgGCCGcCCGCG-GCGCCGCGu -3'
miRNA:   3'- -CGgGUaca--UGGU-GGUGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 89163 0.68 0.761763
Target:  5'- cGCCCAgcgcgcgcagGUcggccGCCGCCGCGgcgGCGUCgGCGc -3'
miRNA:   3'- -CGGGUa---------CA-----UGGUGGUGUa--CGCGG-CGC- -5'
23705 3' -56.9 NC_005261.1 + 88412 0.66 0.833346
Target:  5'- uCCCcgGcGCCGCCGuCGUcccccccgagccGCGCCGCc -3'
miRNA:   3'- cGGGuaCaUGGUGGU-GUA------------CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 88363 0.71 0.560716
Target:  5'- cGCCCA---GCCGCCGCGcgacggugcaGCGCCGCc -3'
miRNA:   3'- -CGGGUacaUGGUGGUGUa---------CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 88298 0.71 0.591052
Target:  5'- -aCCAcGUGCaCGCUGCccGCGCCGCGc -3'
miRNA:   3'- cgGGUaCAUG-GUGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 87658 0.67 0.816385
Target:  5'- cGCCCucg--UCGCCGCAcGCGCuCGCGc -3'
miRNA:   3'- -CGGGuacauGGUGGUGUaCGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 87594 0.71 0.574828
Target:  5'- cGCCCcgGcGCCGCCgccaugacgggcuccGCGcggcuugGCGCCGCGa -3'
miRNA:   3'- -CGGGuaCaUGGUGG---------------UGUa------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 87529 0.69 0.722934
Target:  5'- cGCCCAgGUcggcGCCuucGCCGCGcugGCGCUGCu -3'
miRNA:   3'- -CGGGUaCA----UGG---UGGUGUa--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 87104 0.66 0.849576
Target:  5'- cGUCC-UGgccgcgGCCACCuaccucgcgcacGCcgGCGCCGCc -3'
miRNA:   3'- -CGGGuACa-----UGGUGG------------UGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 86972 0.66 0.849576
Target:  5'- cGCCCAccgccugcUGgGCC-CCGgGcGCGCCGUGa -3'
miRNA:   3'- -CGGGU--------ACaUGGuGGUgUaCGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.