miRNA display CGI


Results 101 - 120 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 86531 0.73 0.454391
Target:  5'- cGCCUuc-UACgGCCACGUgaGCGCCGCGc -3'
miRNA:   3'- -CGGGuacAUGgUGGUGUA--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 85808 0.7 0.631883
Target:  5'- -gCCGUcgACCACCACAgGCGUgGCGa -3'
miRNA:   3'- cgGGUAcaUGGUGGUGUaCGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 85457 0.66 0.871698
Target:  5'- aGCgCCAgGUGgCGCCagucaaacucggaGCA-GCGCCGCGc -3'
miRNA:   3'- -CG-GGUaCAUgGUGG-------------UGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 84854 0.71 0.591052
Target:  5'- -gCCGUGUugCGCUcuuCGgccGCGCCGCGg -3'
miRNA:   3'- cgGGUACAugGUGGu--GUa--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 84692 0.69 0.703016
Target:  5'- aGCCCccGgg-CGCCGC--GCGCCGCGg -3'
miRNA:   3'- -CGGGuaCaugGUGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 84352 0.75 0.392681
Target:  5'- cGCuCCGUGUACCGCgCGCGgUGCGCUuCGg -3'
miRNA:   3'- -CG-GGUACAUGGUG-GUGU-ACGCGGcGC- -5'
23705 3' -56.9 NC_005261.1 + 84144 0.75 0.392681
Target:  5'- cGCUCAUGUGCaGCgCGCccugGCGCCGCGc -3'
miRNA:   3'- -CGGGUACAUGgUG-GUGua--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 83264 0.66 0.849576
Target:  5'- cGCUCAacUGCCgcuaGCCGCAagaugUGCGCgCGCGa -3'
miRNA:   3'- -CGGGUacAUGG----UGGUGU-----ACGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 83023 0.73 0.491923
Target:  5'- gGCCCAgccUGgcccGCCGCCGC-UGCcGCCGCc -3'
miRNA:   3'- -CGGGU---ACa---UGGUGGUGuACG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 82824 0.67 0.816385
Target:  5'- cGCCCAcGUcGCCcCCGCAgucCGCgGCGg -3'
miRNA:   3'- -CGGGUaCA-UGGuGGUGUac-GCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 82435 0.66 0.872429
Target:  5'- uCCCcgGcGCCGggucucCCGCGaGCGCCGCc -3'
miRNA:   3'- cGGGuaCaUGGU------GGUGUaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 81140 0.68 0.732781
Target:  5'- aUCCGcGUGCCGCCGCAcacGCuCCGCa -3'
miRNA:   3'- cGGGUaCAUGGUGGUGUa--CGcGGCGc -5'
23705 3' -56.9 NC_005261.1 + 81073 0.67 0.80765
Target:  5'- cGUCCAUGacucgcaGCUGCCAgCcgGCGCCGUu -3'
miRNA:   3'- -CGGGUACa------UGGUGGU-GuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 80986 0.83 0.119874
Target:  5'- cGCCCGUGauCCGCgGCcgGCGCCGCGa -3'
miRNA:   3'- -CGGGUACauGGUGgUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 80797 0.74 0.418464
Target:  5'- cGUCgAUGUGCCACCugGcgGCGCaCGCc -3'
miRNA:   3'- -CGGgUACAUGGUGGugUa-CGCG-GCGc -5'
23705 3' -56.9 NC_005261.1 + 80437 0.75 0.359951
Target:  5'- cGCCCGUGUGCgCACgccggcgaCGCAgGCGCgCGCGg -3'
miRNA:   3'- -CGGGUACAUG-GUG--------GUGUaCGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 80162 0.68 0.772143
Target:  5'- cGCCCGcGgcggcgggguccucgGCCauGCCGCGccGCGCCGCGc -3'
miRNA:   3'- -CGGGUaCa--------------UGG--UGGUGUa-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 80062 0.66 0.841556
Target:  5'- cGCCCGaGcACCGCCucGCGga-GCCGCGc -3'
miRNA:   3'- -CGGGUaCaUGGUGG--UGUacgCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 79854 0.7 0.621656
Target:  5'- aGCCCA---GCCGCCGCccgggcuccUGCGCCGUc -3'
miRNA:   3'- -CGGGUacaUGGUGGUGu--------ACGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 79417 0.66 0.841556
Target:  5'- cGCCCGcGUcgaagGCCuCCACgggcggcgGUGCGCCGgGc -3'
miRNA:   3'- -CGGGUaCA-----UGGuGGUG--------UACGCGGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.