miRNA display CGI


Results 121 - 140 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 79375 0.72 0.550694
Target:  5'- cGCCCAgcgGcGCCGCCAgGaacgggUGcCGCCGCGc -3'
miRNA:   3'- -CGGGUa--CaUGGUGGUgU------AC-GCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 79337 0.67 0.811163
Target:  5'- aGCUCAgcgcGcGCgGCCGCggagagcgcgcgcggGUGCGCCGCGc -3'
miRNA:   3'- -CGGGUa---CaUGgUGGUG---------------UACGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 79174 0.7 0.625746
Target:  5'- cGCCCGUcucguaGUGCCGCCgggccacgagcgagaGCggGCGCCgGCGc -3'
miRNA:   3'- -CGGGUA------CAUGGUGG---------------UGuaCGCGG-CGC- -5'
23705 3' -56.9 NC_005261.1 + 78989 0.66 0.841556
Target:  5'- aGCCCGggcucGCCGgCGCcgGCGCUGUc -3'
miRNA:   3'- -CGGGUaca--UGGUgGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 78812 0.66 0.857399
Target:  5'- cGCCgCAgcggGUgccgcgccGCCACCACcuccgcgGCGCgGCGg -3'
miRNA:   3'- -CGG-GUa---CA--------UGGUGGUGua-----CGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 78621 0.7 0.65233
Target:  5'- cUCCAUGUGCUcgGCCGCA-GCGaCgGCGg -3'
miRNA:   3'- cGGGUACAUGG--UGGUGUaCGC-GgCGC- -5'
23705 3' -56.9 NC_005261.1 + 78360 0.69 0.713009
Target:  5'- aGCCC----GCCGCCGUcgGCGCCGaCGg -3'
miRNA:   3'- -CGGGuacaUGGUGGUGuaCGCGGC-GC- -5'
23705 3' -56.9 NC_005261.1 + 77969 0.74 0.409756
Target:  5'- gGCCCGgg-GCCGCCGCGcucGCGUCGCu -3'
miRNA:   3'- -CGGGUacaUGGUGGUGUa--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 77675 0.69 0.713009
Target:  5'- gGCgCAcggcgGUGCCACCGCGUGC-UCGUGc -3'
miRNA:   3'- -CGgGUa----CAUGGUGGUGUACGcGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 77631 0.66 0.833346
Target:  5'- aGCCCGUcuucAUCACCAUGgacGcCGCCGCGc -3'
miRNA:   3'- -CGGGUAca--UGGUGGUGUa--C-GCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 76866 0.71 0.570787
Target:  5'- gGCCCGg--GCCuucuCCgGCAaGCGCCGCGg -3'
miRNA:   3'- -CGGGUacaUGGu---GG-UGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 76492 0.66 0.849576
Target:  5'- cGCCCGUGcgcACCACCGaggGC-CCGuCGa -3'
miRNA:   3'- -CGGGUACa--UGGUGGUguaCGcGGC-GC- -5'
23705 3' -56.9 NC_005261.1 + 76115 0.75 0.359951
Target:  5'- cGCCCGuUGUGguaCAUCACGUcgGCGCCGCGc -3'
miRNA:   3'- -CGGGU-ACAUg--GUGGUGUA--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 75883 0.73 0.454391
Target:  5'- gGCCCGUGU-UCugCAgGaagGCGCCGCGc -3'
miRNA:   3'- -CGGGUACAuGGugGUgUa--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 75841 0.71 0.580901
Target:  5'- cGCCgAgagGcGCCGCCAgCAUGCGCCcCGg -3'
miRNA:   3'- -CGGgUa--CaUGGUGGU-GUACGCGGcGC- -5'
23705 3' -56.9 NC_005261.1 + 75713 0.67 0.788799
Target:  5'- cGCgCCAcgGUcgacGCCAUCACcgcgcugcuccugGUGCGCCGCc -3'
miRNA:   3'- -CG-GGUa-CA----UGGUGGUG-------------UACGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 74668 0.68 0.771206
Target:  5'- gGUCCGUGaGCgGCgugCGCAUG-GCCGCGg -3'
miRNA:   3'- -CGGGUACaUGgUG---GUGUACgCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 74620 0.75 0.376076
Target:  5'- aGCCCAc--GCCGagguCCACGUGCGCgCGCGg -3'
miRNA:   3'- -CGGGUacaUGGU----GGUGUACGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 74447 0.69 0.682858
Target:  5'- aGCCCggGUGCaGCCcCGUGCGCaGCu -3'
miRNA:   3'- -CGGGuaCAUGgUGGuGUACGCGgCGc -5'
23705 3' -56.9 NC_005261.1 + 74338 0.71 0.611437
Target:  5'- cGCCgCGUGgugCGCCACcgGCuGCCGCa -3'
miRNA:   3'- -CGG-GUACaugGUGGUGuaCG-CGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.