miRNA display CGI


Results 141 - 160 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 73796 0.67 0.824953
Target:  5'- cGCCCAUGcUGCagcaGCCGCc-GCG-CGCGa -3'
miRNA:   3'- -CGGGUAC-AUGg---UGGUGuaCGCgGCGC- -5'
23705 3' -56.9 NC_005261.1 + 73617 0.68 0.780525
Target:  5'- aGCUCGcGgcgcGCCACgACGUGCGgCGCa -3'
miRNA:   3'- -CGGGUaCa---UGGUGgUGUACGCgGCGc -5'
23705 3' -56.9 NC_005261.1 + 73588 0.66 0.872429
Target:  5'- aGCgCCGUucACgCGCgCGCGcGCGCCGCGc -3'
miRNA:   3'- -CG-GGUAcaUG-GUG-GUGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 73419 0.68 0.742541
Target:  5'- cGUCCAcGaGCCGCCGCA-GCGCgUGCa -3'
miRNA:   3'- -CGGGUaCaUGGUGGUGUaCGCG-GCGc -5'
23705 3' -56.9 NC_005261.1 + 71102 0.73 0.463631
Target:  5'- aGCCCccccGCCGCCGCGcgcGCGCCGCc -3'
miRNA:   3'- -CGGGuacaUGGUGGUGUa--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 71035 0.67 0.798756
Target:  5'- gGCCCGcGaagGCCGCCgGCAgcgccacCGCCGCGa -3'
miRNA:   3'- -CGGGUaCa--UGGUGG-UGUac-----GCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 70906 0.7 0.662533
Target:  5'- aGCCCGcg-GCCGCCGCca--GCCGCGc -3'
miRNA:   3'- -CGGGUacaUGGUGGUGuacgCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 70602 0.66 0.857399
Target:  5'- cGCCCccuccuCCGCC-UcgGCGCCGCc -3'
miRNA:   3'- -CGGGuacau-GGUGGuGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 70243 0.68 0.758907
Target:  5'- cGCgCCGUGgccgGCUACacgcgcgcggagcuCGCGcGCGCCGCGg -3'
miRNA:   3'- -CG-GGUACa---UGGUG--------------GUGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 70198 0.66 0.839929
Target:  5'- gGCCCccucgcccCCGCCGCcgGCGCgGCc -3'
miRNA:   3'- -CGGGuacau---GGUGGUGuaCGCGgCGc -5'
23705 3' -56.9 NC_005261.1 + 70129 0.66 0.872429
Target:  5'- uGCCUGgcgcGCCugCGCccGCGCgGCGg -3'
miRNA:   3'- -CGGGUaca-UGGugGUGuaCGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 69753 0.72 0.529837
Target:  5'- cGCCCGcgaccgagGUcaucgucACCGCCGCccGCGCCGCc -3'
miRNA:   3'- -CGGGUa-------CA-------UGGUGGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 69530 0.72 0.520986
Target:  5'- cGCCCuc-UGCCGCgGCuGUGCGCCGUc -3'
miRNA:   3'- -CGGGuacAUGGUGgUG-UACGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 69405 0.7 0.621656
Target:  5'- gGCCCuuuucggGCCG-CGCggGCGCCGCGg -3'
miRNA:   3'- -CGGGuaca---UGGUgGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 67842 0.78 0.260909
Target:  5'- cGCCCcac--CCGCCGCAggGCGCCGCGa -3'
miRNA:   3'- -CGGGuacauGGUGGUGUa-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 67764 0.73 0.488104
Target:  5'- gGCCCAgcaUGCCaagcGCCGCGgcgcugagguucgGCGCCGCGg -3'
miRNA:   3'- -CGGGUac-AUGG----UGGUGUa------------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 67335 0.66 0.872429
Target:  5'- -gCCGUGgGCCAgCCGCc-GCGCgGCGg -3'
miRNA:   3'- cgGGUACaUGGU-GGUGuaCGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 67265 0.68 0.771206
Target:  5'- cGCCCGcGcGCCACgACGcucucaaGCGCCGCc -3'
miRNA:   3'- -CGGGUaCaUGGUGgUGUa------CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 65625 0.68 0.761763
Target:  5'- uGCCCAgcacGgcgGCCGCgCACGcguccgGgGCCGCGg -3'
miRNA:   3'- -CGGGUa---Ca--UGGUG-GUGUa-----CgCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 65423 0.68 0.771206
Target:  5'- cGCCC----GCCGCCGCggGgGuCCGCGa -3'
miRNA:   3'- -CGGGuacaUGGUGGUGuaCgC-GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.