miRNA display CGI


Results 101 - 120 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 33589 0.66 0.849576
Target:  5'- uGCuCCAgcggGUcCCGcuCCGCAgcgGCGUCGCGg -3'
miRNA:   3'- -CG-GGUa---CAuGGU--GGUGUa--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 39623 0.66 0.849576
Target:  5'- uGCCgc--UGCCGCCGCcgGCcgccgGCCGCGc -3'
miRNA:   3'- -CGGguacAUGGUGGUGuaCG-----CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 76492 0.66 0.849576
Target:  5'- cGCCCGUGcgcACCACCGaggGC-CCGuCGa -3'
miRNA:   3'- -CGGGUACa--UGGUGGUguaCGcGGC-GC- -5'
23705 3' -56.9 NC_005261.1 + 83264 0.66 0.849576
Target:  5'- cGCUCAacUGCCgcuaGCCGCAagaugUGCGCgCGCGa -3'
miRNA:   3'- -CGGGUacAUGG----UGGUGU-----ACGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 132917 0.66 0.849576
Target:  5'- aGCCCcc--GCUAUCGCGcGCGCCGgGg -3'
miRNA:   3'- -CGGGuacaUGGUGGUGUaCGCGGCgC- -5'
23705 3' -56.9 NC_005261.1 + 116621 0.66 0.857399
Target:  5'- cGCCgGgcgaGCCGCCGCGgcgcggGcCGCCGCa -3'
miRNA:   3'- -CGGgUaca-UGGUGGUGUa-----C-GCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 109509 0.66 0.857399
Target:  5'- gGCgCGgacGCCGCCGCcUGCGCCcaacGCGg -3'
miRNA:   3'- -CGgGUacaUGGUGGUGuACGCGG----CGC- -5'
23705 3' -56.9 NC_005261.1 + 52139 0.66 0.865019
Target:  5'- aGCgUCGUGUGCgCGCaCGCGUGCcggucGUCGCGc -3'
miRNA:   3'- -CG-GGUACAUG-GUG-GUGUACG-----CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 110782 0.66 0.864267
Target:  5'- -gCCGUGUgcgccuuucauccACCGCCACcguUGCuuGCCGCc -3'
miRNA:   3'- cgGGUACA-------------UGGUGGUGu--ACG--CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 61625 0.66 0.862755
Target:  5'- cCCCGcGUucuucggcgcggacGCCcCCGCGcugGCGCCGCGc -3'
miRNA:   3'- cGGGUaCA--------------UGGuGGUGUa--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 18866 0.66 0.861996
Target:  5'- gGCCCcgGUccccgcgGCCgagcaaggccccGCCGCGgggccgcaaguggaUGCGCUGCGa -3'
miRNA:   3'- -CGGGuaCA-------UGG------------UGGUGU--------------ACGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 38689 0.66 0.857399
Target:  5'- cGCgCCAgcu-CCGCCACGgucGCGCgCGUGg -3'
miRNA:   3'- -CG-GGUacauGGUGGUGUa--CGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 61488 0.66 0.857399
Target:  5'- cGCCCAcGUcGCgCugUGCGUGCugggccGCCGCGu -3'
miRNA:   3'- -CGGGUaCA-UG-GugGUGUACG------CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 107435 0.66 0.857399
Target:  5'- gGCCuCGaGgcCCGCCGCGacgGCccGCCGCGg -3'
miRNA:   3'- -CGG-GUaCauGGUGGUGUa--CG--CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 2758 0.66 0.857399
Target:  5'- cGCCCuucAUGcGCUGCUACcUGCGCgggCGCGg -3'
miRNA:   3'- -CGGG---UACaUGGUGGUGuACGCG---GCGC- -5'
23705 3' -56.9 NC_005261.1 + 17750 0.66 0.857399
Target:  5'- gGCCC-UGUGCCugCggcGCAagGCGCgggCGCGc -3'
miRNA:   3'- -CGGGuACAUGGugG---UGUa-CGCG---GCGC- -5'
23705 3' -56.9 NC_005261.1 + 37484 0.66 0.857399
Target:  5'- cGCCgCGc--ACCGCCGCGaGCGUCGCc -3'
miRNA:   3'- -CGG-GUacaUGGUGGUGUaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 70602 0.66 0.857399
Target:  5'- cGCCCccuccuCCGCC-UcgGCGCCGCc -3'
miRNA:   3'- -CGGGuacau-GGUGGuGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 94090 0.66 0.857399
Target:  5'- gGgCCAgg-GCCGcugcCCGCggGCGCCGCa -3'
miRNA:   3'- -CgGGUacaUGGU----GGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 95006 0.66 0.857399
Target:  5'- gGCCUcgcgGUGCCGgCACcguccagGCGCCGgGg -3'
miRNA:   3'- -CGGGua--CAUGGUgGUGua-----CGCGGCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.