miRNA display CGI


Results 121 - 140 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 133470 0.66 0.841556
Target:  5'- uGCCUccGccgcgGCCGCgagCGCccGCGCCGCGg -3'
miRNA:   3'- -CGGGuaCa----UGGUG---GUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 5785 0.66 0.841556
Target:  5'- gGCCCGgcgaGCCGCCAgGggGCGCUgGCGc -3'
miRNA:   3'- -CGGGUaca-UGGUGGUgUa-CGCGG-CGC- -5'
23705 3' -56.9 NC_005261.1 + 30947 0.66 0.849576
Target:  5'- cGUCCAcGUugGCCACCGCcccgGCaCCGCa -3'
miRNA:   3'- -CGGGUaCA--UGGUGGUGua--CGcGGCGc -5'
23705 3' -56.9 NC_005261.1 + 93124 0.66 0.849576
Target:  5'- -aCCGUGc-CCGCCGcCGUGCuGCCGUa -3'
miRNA:   3'- cgGGUACauGGUGGU-GUACG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 87104 0.66 0.849576
Target:  5'- cGUCC-UGgccgcgGCCACCuaccucgcgcacGCcgGCGCCGCc -3'
miRNA:   3'- -CGGGuACa-----UGGUGG------------UGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 61488 0.66 0.857399
Target:  5'- cGCCCAcGUcGCgCugUGCGUGCugggccGCCGCGu -3'
miRNA:   3'- -CGGGUaCA-UG-GugGUGUACG------CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 107435 0.66 0.857399
Target:  5'- gGCCuCGaGgcCCGCCGCGacgGCccGCCGCGg -3'
miRNA:   3'- -CGG-GUaCauGGUGGUGUa--CG--CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 2758 0.66 0.857399
Target:  5'- cGCCCuucAUGcGCUGCUACcUGCGCgggCGCGg -3'
miRNA:   3'- -CGGG---UACaUGGUGGUGuACGCG---GCGC- -5'
23705 3' -56.9 NC_005261.1 + 17750 0.66 0.857399
Target:  5'- gGCCC-UGUGCCugCggcGCAagGCGCgggCGCGc -3'
miRNA:   3'- -CGGGuACAUGGugG---UGUa-CGCG---GCGC- -5'
23705 3' -56.9 NC_005261.1 + 37484 0.66 0.857399
Target:  5'- cGCCgCGc--ACCGCCGCGaGCGUCGCc -3'
miRNA:   3'- -CGG-GUacaUGGUGGUGUaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 70602 0.66 0.857399
Target:  5'- cGCCCccuccuCCGCC-UcgGCGCCGCc -3'
miRNA:   3'- -CGGGuacau-GGUGGuGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 94090 0.66 0.857399
Target:  5'- gGgCCAgg-GCCGcugcCCGCggGCGCCGCa -3'
miRNA:   3'- -CgGGUacaUGGU----GGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 95006 0.66 0.857399
Target:  5'- gGCCUcgcgGUGCCGgCACcguccagGCGCCGgGg -3'
miRNA:   3'- -CGGGua--CAUGGUgGUGua-----CGCGGCgC- -5'
23705 3' -56.9 NC_005261.1 + 109509 0.66 0.857399
Target:  5'- gGCgCGgacGCCGCCGCcUGCGCCcaacGCGg -3'
miRNA:   3'- -CGgGUacaUGGUGGUGuACGCGG----CGC- -5'
23705 3' -56.9 NC_005261.1 + 116621 0.66 0.857399
Target:  5'- cGCCgGgcgaGCCGCCGCGgcgcggGcCGCCGCa -3'
miRNA:   3'- -CGGgUaca-UGGUGGUGUa-----C-GCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 14228 0.66 0.857399
Target:  5'- aGCCCAuUGaGCCGCgAaagaGCGUCGCGu -3'
miRNA:   3'- -CGGGU-ACaUGGUGgUgua-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 78812 0.66 0.857399
Target:  5'- cGCCgCAgcggGUgccgcgccGCCACCACcuccgcgGCGCgGCGg -3'
miRNA:   3'- -CGG-GUa---CA--------UGGUGGUGua-----CGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 28404 0.66 0.849576
Target:  5'- cGCCCcggcaggucgucGUGgACaCGcCCGCcgGCGCCGCc -3'
miRNA:   3'- -CGGG------------UACaUG-GU-GGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 37367 0.66 0.849576
Target:  5'- cGCCUGUGaa-CGCgGCcgGCaGCCGCGc -3'
miRNA:   3'- -CGGGUACaugGUGgUGuaCG-CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 86972 0.66 0.849576
Target:  5'- cGCCCAccgccugcUGgGCC-CCGgGcGCGCCGUGa -3'
miRNA:   3'- -CGGGU--------ACaUGGuGGUgUaCGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.