miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 94090 0.66 0.857399
Target:  5'- gGgCCAgg-GCCGcugcCCGCggGCGCCGCa -3'
miRNA:   3'- -CgGGUacaUGGU----GGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 95006 0.66 0.857399
Target:  5'- gGCCUcgcgGUGCCGgCACcguccagGCGCCGgGg -3'
miRNA:   3'- -CGGGua--CAUGGUgGUGua-----CGCGGCgC- -5'
23705 3' -56.9 NC_005261.1 + 109509 0.66 0.857399
Target:  5'- gGCgCGgacGCCGCCGCcUGCGCCcaacGCGg -3'
miRNA:   3'- -CGgGUacaUGGUGGUGuACGCGG----CGC- -5'
23705 3' -56.9 NC_005261.1 + 116621 0.66 0.857399
Target:  5'- cGCCgGgcgaGCCGCCGCGgcgcggGcCGCCGCa -3'
miRNA:   3'- -CGGgUaca-UGGUGGUGUa-----C-GCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 14228 0.66 0.857399
Target:  5'- aGCCCAuUGaGCCGCgAaagaGCGUCGCGu -3'
miRNA:   3'- -CGGGU-ACaUGGUGgUgua-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 78812 0.66 0.857399
Target:  5'- cGCCgCAgcggGUgccgcgccGCCACCACcuccgcgGCGCgGCGg -3'
miRNA:   3'- -CGG-GUa---CA--------UGGUGGUGua-----CGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 28404 0.66 0.849576
Target:  5'- cGCCCcggcaggucgucGUGgACaCGcCCGCcgGCGCCGCc -3'
miRNA:   3'- -CGGG------------UACaUG-GU-GGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 2758 0.66 0.857399
Target:  5'- cGCCCuucAUGcGCUGCUACcUGCGCgggCGCGg -3'
miRNA:   3'- -CGGG---UACaUGGUGGUGuACGCG---GCGC- -5'
23705 3' -56.9 NC_005261.1 + 107435 0.66 0.857399
Target:  5'- gGCCuCGaGgcCCGCCGCGacgGCccGCCGCGg -3'
miRNA:   3'- -CGG-GUaCauGGUGGUGUa--CG--CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 61488 0.66 0.857399
Target:  5'- cGCCCAcGUcGCgCugUGCGUGCugggccGCCGCGu -3'
miRNA:   3'- -CGGGUaCA-UG-GugGUGUACG------CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 24517 0.66 0.865019
Target:  5'- uGCuCCggGUGCCACCuguaGCG-GCGaCGCGg -3'
miRNA:   3'- -CG-GGuaCAUGGUGG----UGUaCGCgGCGC- -5'
23705 3' -56.9 NC_005261.1 + 55210 0.66 0.865019
Target:  5'- aGCUCG-GUGCgCAcCCGCA-GCuGCCGCGu -3'
miRNA:   3'- -CGGGUaCAUG-GU-GGUGUaCG-CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 63949 0.66 0.865019
Target:  5'- cGCCCccccggcgggggGUGggggcGCCGCCcCcgGCGCgGCGu -3'
miRNA:   3'- -CGGG------------UACa----UGGUGGuGuaCGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 102786 0.66 0.865019
Target:  5'- cGCCCGgcc-CCGCCGCG-GCaGCCGUu -3'
miRNA:   3'- -CGGGUacauGGUGGUGUaCG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 118979 0.66 0.865019
Target:  5'- gGCCCGUGUGCCgcGCCGaaguCGCCcagGCa -3'
miRNA:   3'- -CGGGUACAUGG--UGGUguacGCGG---CGc -5'
23705 3' -56.9 NC_005261.1 + 52139 0.66 0.865019
Target:  5'- aGCgUCGUGUGCgCGCaCGCGUGCcggucGUCGCGc -3'
miRNA:   3'- -CG-GGUACAUG-GUG-GUGUACG-----CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 110782 0.66 0.864267
Target:  5'- -gCCGUGUgcgccuuucauccACCGCCACcguUGCuuGCCGCc -3'
miRNA:   3'- cgGGUACA-------------UGGUGGUGu--ACG--CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 61625 0.66 0.862755
Target:  5'- cCCCGcGUucuucggcgcggacGCCcCCGCGcugGCGCCGCGc -3'
miRNA:   3'- cGGGUaCA--------------UGGuGGUGUa--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 18866 0.66 0.861996
Target:  5'- gGCCCcgGUccccgcgGCCgagcaaggccccGCCGCGgggccgcaaguggaUGCGCUGCGa -3'
miRNA:   3'- -CGGGuaCA-------UGG------------UGGUGU--------------ACGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 38689 0.66 0.857399
Target:  5'- cGCgCCAgcu-CCGCCACGgucGCGCgCGUGg -3'
miRNA:   3'- -CG-GGUacauGGUGGUGUa--CGCG-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.