miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23706 3' -57.2 NC_005261.1 + 67271 0.66 0.848221
Target:  5'- aGCUUGCgcccGCGCGccacgacGCUCUcaagCGCCGCCc -3'
miRNA:   3'- -UGAGCGa---CGUGCu------CGAGGa---GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 56582 0.66 0.848221
Target:  5'- aGC-CGCUGCGCG-GCggugacgCCccgCGCCGCg -3'
miRNA:   3'- -UGaGCGACGUGCuCGa------GGa--GUGGUGg -5'
23706 3' -57.2 NC_005261.1 + 30747 0.66 0.848221
Target:  5'- aGCgcccgCGCUGCGCGcGCaaacUCCgcggCcCCGCCg -3'
miRNA:   3'- -UGa----GCGACGUGCuCG----AGGa---GuGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 18062 0.66 0.848221
Target:  5'- gGCgCGCUGCGucccCGAGCgcgUCUC-CCugCg -3'
miRNA:   3'- -UGaGCGACGU----GCUCGa--GGAGuGGugG- -5'
23706 3' -57.2 NC_005261.1 + 18031 0.66 0.848221
Target:  5'- cGCUggaCGgUGCGCGAcggcgccgcGC-CCUCGCgCACCg -3'
miRNA:   3'- -UGA---GCgACGUGCU---------CGaGGAGUG-GUGG- -5'
23706 3' -57.2 NC_005261.1 + 123142 0.66 0.848221
Target:  5'- cGCUCGCaguggGcCGCGAucGCcCCggcggCGCCGCCg -3'
miRNA:   3'- -UGAGCGa----C-GUGCU--CGaGGa----GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 81100 0.66 0.848221
Target:  5'- uGCUCGCgagcagccGCGCGAcgUCCUCGuCCAUg -3'
miRNA:   3'- -UGAGCGa-------CGUGCUcgAGGAGU-GGUGg -5'
23706 3' -57.2 NC_005261.1 + 85904 0.66 0.843409
Target:  5'- gGCaUCgGCUGCACGAcGCcgccugucccaugacUCCUUgacgGCCGCCc -3'
miRNA:   3'- -UG-AG-CGACGUGCU-CG---------------AGGAG----UGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 136676 0.66 0.843409
Target:  5'- uACUCGCgcggcgGCACGGGCaCCgcggugcgCgggcccaggcgcgugGCCACCg -3'
miRNA:   3'- -UGAGCGa-----CGUGCUCGaGGa-------G---------------UGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 15151 0.66 0.840163
Target:  5'- gGC-CGCccagGCGCGGGCcCCgccCAUCGCCc -3'
miRNA:   3'- -UGaGCGa---CGUGCUCGaGGa--GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 122080 0.66 0.840163
Target:  5'- aGCg-GCgGC-CGGGCccucccCCUCGCCGCCg -3'
miRNA:   3'- -UGagCGaCGuGCUCGa-----GGAGUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 110684 0.66 0.840163
Target:  5'- cGCUCGCcg---GAGC-CCUCGCCGCg -3'
miRNA:   3'- -UGAGCGacgugCUCGaGGAGUGGUGg -5'
23706 3' -57.2 NC_005261.1 + 96158 0.66 0.840163
Target:  5'- aGCUcCGCcGCGCGcAGCgCCUCgaACUGCCc -3'
miRNA:   3'- -UGA-GCGaCGUGC-UCGaGGAG--UGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 79394 0.66 0.840163
Target:  5'- gGCggCGgUGCGcCGGGCUCgCccagcggCGCCGCCa -3'
miRNA:   3'- -UGa-GCgACGU-GCUCGAG-Ga------GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 65447 0.66 0.840163
Target:  5'- aGCgccggCGCcgGCACcGGCUCgCgccCGCCGCCg -3'
miRNA:   3'- -UGa----GCGa-CGUGcUCGAG-Ga--GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 22899 0.66 0.840163
Target:  5'- gGC-CGCggcgGCGCGccgcAGCcCCcgCACCACCu -3'
miRNA:   3'- -UGaGCGa---CGUGC----UCGaGGa-GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 11110 0.66 0.840163
Target:  5'- cGCcCGCcGCGgGGGCagcCCUCcCCGCCg -3'
miRNA:   3'- -UGaGCGaCGUgCUCGa--GGAGuGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 67376 0.66 0.837708
Target:  5'- aGCUCGCcGCGCaggaaggcgucguaGAGgUCCgaCACCACg -3'
miRNA:   3'- -UGAGCGaCGUG--------------CUCgAGGa-GUGGUGg -5'
23706 3' -57.2 NC_005261.1 + 104902 0.66 0.835236
Target:  5'- cGCUCGCgggGCccGCGAGCaCCaggggcggcggcggCACCGCUg -3'
miRNA:   3'- -UGAGCGa--CG--UGCUCGaGGa-------------GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 37228 0.66 0.831915
Target:  5'- cGC-CGCcGCgaaGAGCUCC-CACgCGCCg -3'
miRNA:   3'- -UGaGCGaCGug-CUCGAGGaGUG-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.