miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23706 5' -57.5 NC_005261.1 + 419 0.67 0.751531
Target:  5'- gGCuGCGGCGGcGGCUgcgGCGGcgGCUgCGg -3'
miRNA:   3'- -CGuCGUCGCC-CUGAa--CGUCa-CGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 126915 0.67 0.751531
Target:  5'- cGCGGaggGGCGGGGCg-GgGGUGCCggcUCGa -3'
miRNA:   3'- -CGUCg--UCGCCCUGaaCgUCACGG---AGC- -5'
23706 5' -57.5 NC_005261.1 + 86499 0.67 0.750565
Target:  5'- aGCAGCGGCGcgcuacaucgcccGGGCgcGCAGcgGCCgCGg -3'
miRNA:   3'- -CGUCGUCGC-------------CCUGaaCGUCa-CGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 95018 0.67 0.74182
Target:  5'- uGCGGCGGCaucGGcCUcGCGGUGCCg-- -3'
miRNA:   3'- -CGUCGUCGc--CCuGAaCGUCACGGagc -5'
23706 5' -57.5 NC_005261.1 + 102408 0.67 0.74182
Target:  5'- uGUAGCGGCGGcGGCUccuggcgGCGGUaaucGCCgCGg -3'
miRNA:   3'- -CGUCGUCGCC-CUGAa------CGUCA----CGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 8738 0.68 0.732011
Target:  5'- gGCGGCGGCGGcGGCagggGCGGgaccggggGCgUCGc -3'
miRNA:   3'- -CGUCGUCGCC-CUGaa--CGUCa-------CGgAGC- -5'
23706 5' -57.5 NC_005261.1 + 2941 0.68 0.732011
Target:  5'- -aGGCGGCGcGGGCgcUGCGG-GaCCUCGu -3'
miRNA:   3'- cgUCGUCGC-CCUGa-ACGUCaC-GGAGC- -5'
23706 5' -57.5 NC_005261.1 + 42583 0.68 0.732011
Target:  5'- gGCGcCGGCgGGGGCUcGCGGU-CCUCGc -3'
miRNA:   3'- -CGUcGUCG-CCCUGAaCGUCAcGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 121264 0.68 0.722116
Target:  5'- cGCGGCGGCGGGuACgccgGCGG-GUCg-- -3'
miRNA:   3'- -CGUCGUCGCCC-UGaa--CGUCaCGGagc -5'
23706 5' -57.5 NC_005261.1 + 57513 0.68 0.722116
Target:  5'- uCAGCcGCGcGGGCUUcaGCGGcGCCUCc -3'
miRNA:   3'- cGUCGuCGC-CCUGAA--CGUCaCGGAGc -5'
23706 5' -57.5 NC_005261.1 + 13363 0.68 0.722116
Target:  5'- aGCAGgcucCGGUGGGGCgcugacucggGCAGgGCCUCu -3'
miRNA:   3'- -CGUC----GUCGCCCUGaa--------CGUCaCGGAGc -5'
23706 5' -57.5 NC_005261.1 + 117834 0.68 0.712142
Target:  5'- cGUGGCGGCGGG-CUgcgcaGCGGcGCCggCGg -3'
miRNA:   3'- -CGUCGUCGCCCuGAa----CGUCaCGGa-GC- -5'
23706 5' -57.5 NC_005261.1 + 110937 0.68 0.702101
Target:  5'- gGCGGCGggccgccccGCGGGGCggGCAG-GcCCUCc -3'
miRNA:   3'- -CGUCGU---------CGCCCUGaaCGUCaC-GGAGc -5'
23706 5' -57.5 NC_005261.1 + 138002 0.68 0.681848
Target:  5'- gGCGGCGGCGGcGGCggcgGCAGcgGuCCUgGu -3'
miRNA:   3'- -CGUCGUCGCC-CUGaa--CGUCa-C-GGAgC- -5'
23706 5' -57.5 NC_005261.1 + 331 0.68 0.681848
Target:  5'- gGCGGCGGCGGcGGCggcgGCAGcgGuCCUgGu -3'
miRNA:   3'- -CGUCGUCGCC-CUGaa--CGUCa-C-GGAgC- -5'
23706 5' -57.5 NC_005261.1 + 40646 0.69 0.671655
Target:  5'- gGCAGgGGCGGGGCgggcucgGCGGcgcgGCCggcaUCGa -3'
miRNA:   3'- -CGUCgUCGCCCUGaa-----CGUCa---CGG----AGC- -5'
23706 5' -57.5 NC_005261.1 + 81587 0.69 0.66143
Target:  5'- cCGGCAGCGGGccACggUGUuccuGGUGCCgCGg -3'
miRNA:   3'- cGUCGUCGCCC--UGa-ACG----UCACGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 17002 0.69 0.640917
Target:  5'- cGCGGCGGCGGcGCcUGCccgAGUGCgaCGg -3'
miRNA:   3'- -CGUCGUCGCCcUGaACG---UCACGgaGC- -5'
23706 5' -57.5 NC_005261.1 + 6461 0.69 0.640917
Target:  5'- gGC-GCGcGCGGGACc-GCGGUGCC-CGc -3'
miRNA:   3'- -CGuCGU-CGCCCUGaaCGUCACGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 125966 0.69 0.640917
Target:  5'- aGgGGCGGCGgaGGGCUUGCGGcgucgGCCgcgUCGg -3'
miRNA:   3'- -CgUCGUCGC--CCUGAACGUCa----CGG---AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.