miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23706 5' -57.5 NC_005261.1 + 116567 0.66 0.824647
Target:  5'- --cGCGGCGGGcGCgcgUGCGGgcgGgCUCGc -3'
miRNA:   3'- cguCGUCGCCC-UGa--ACGUCa--CgGAGC- -5'
23706 5' -57.5 NC_005261.1 + 29519 0.66 0.824647
Target:  5'- uGCAGCAGCGGGuggacgACggccGCGcUGCC-CGc -3'
miRNA:   3'- -CGUCGUCGCCC------UGaa--CGUcACGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 38203 0.66 0.824647
Target:  5'- cGUGGCGGCGGGGCagcGUGGcgGCCa-- -3'
miRNA:   3'- -CGUCGUCGCCCUGaa-CGUCa-CGGagc -5'
23706 5' -57.5 NC_005261.1 + 40721 0.66 0.824647
Target:  5'- cCGGCGuccGCGGGGCUuggGCGGggcUGCCggggCGg -3'
miRNA:   3'- cGUCGU---CGCCCUGAa--CGUC---ACGGa---GC- -5'
23706 5' -57.5 NC_005261.1 + 138066 0.67 0.751531
Target:  5'- gGCuGCGGCGGcGGC-UGCGGcgGCC-CGc -3'
miRNA:   3'- -CGuCGUCGCC-CUGaACGUCa-CGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 455 0.67 0.751531
Target:  5'- gGCuGCGGCGGcGGCUgcgGCGGcgGCUgCGg -3'
miRNA:   3'- -CGuCGUCGCC-CUGAa--CGUCa-CGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 123116 0.67 0.779995
Target:  5'- gGCGGCGccGcCGGGGCgcGCGGUcgcgGCCUCc -3'
miRNA:   3'- -CGUCGU--C-GCCCUGaaCGUCA----CGGAGc -5'
23706 5' -57.5 NC_005261.1 + 419 0.67 0.751531
Target:  5'- gGCuGCGGCGGcGGCUgcgGCGGcgGCUgCGg -3'
miRNA:   3'- -CGuCGUCGCC-CUGAa--CGUCa-CGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 126915 0.67 0.751531
Target:  5'- cGCGGaggGGCGGGGCg-GgGGUGCCggcUCGa -3'
miRNA:   3'- -CGUCg--UCGCCCUGaaCgUCACGG---AGC- -5'
23706 5' -57.5 NC_005261.1 + 78540 0.67 0.761137
Target:  5'- gGCGGCcaugcGCGGGACgucgGCcucguacgGGUGCCggCGg -3'
miRNA:   3'- -CGUCGu----CGCCCUGaa--CG--------UCACGGa-GC- -5'
23706 5' -57.5 NC_005261.1 + 49576 0.67 0.761137
Target:  5'- cCGGCGGCGGGGCg-GCGGcgcgcgccgGCC-CGg -3'
miRNA:   3'- cGUCGUCGCCCUGaaCGUCa--------CGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 9582 0.67 0.761137
Target:  5'- --cGCGGCGGGGCUcgcgcUGCGGcUGaCgCUCGc -3'
miRNA:   3'- cguCGUCGCCCUGA-----ACGUC-AC-G-GAGC- -5'
23706 5' -57.5 NC_005261.1 + 55313 0.67 0.761137
Target:  5'- cGCGGCGGcCGGcGCUUcCAGcGCCUCc -3'
miRNA:   3'- -CGUCGUC-GCCcUGAAcGUCaCGGAGc -5'
23706 5' -57.5 NC_005261.1 + 115154 0.67 0.769684
Target:  5'- cGguGCAGCGGGccggccuGCUcgggcgagagcUGCAGcagcGCCUCc -3'
miRNA:   3'- -CguCGUCGCCC-------UGA-----------ACGUCa---CGGAGc -5'
23706 5' -57.5 NC_005261.1 + 119584 0.67 0.770628
Target:  5'- aGCGGCGGCGGGcaugaUUGCGcucucGUGCUcgcgcUCGu -3'
miRNA:   3'- -CGUCGUCGCCCug---AACGU-----CACGG-----AGC- -5'
23706 5' -57.5 NC_005261.1 + 135385 0.67 0.770628
Target:  5'- cCGGCGcCGGGGCUcccGCGG-GCCUCc -3'
miRNA:   3'- cGUCGUcGCCCUGAa--CGUCaCGGAGc -5'
23706 5' -57.5 NC_005261.1 + 138254 0.67 0.779995
Target:  5'- uGguGCucGCGGGGCUgGCAGgGCUggCGg -3'
miRNA:   3'- -CguCGu-CGCCCUGAaCGUCaCGGa-GC- -5'
23706 5' -57.5 NC_005261.1 + 571 0.67 0.779995
Target:  5'- uGguGCucGCGGGGCUgGCAGgGCUggCGg -3'
miRNA:   3'- -CguCGu-CGCCCUGAaCGUCaCGGa-GC- -5'
23706 5' -57.5 NC_005261.1 + 84016 0.67 0.779995
Target:  5'- gGCAGCGGCucGGGGCgcccgcgaagGCcGUGCCg-- -3'
miRNA:   3'- -CGUCGUCG--CCCUGaa--------CGuCACGGagc -5'
23706 5' -57.5 NC_005261.1 + 78599 0.67 0.779995
Target:  5'- aCGGCGGCGGGcg--GCAG-GCCggCGu -3'
miRNA:   3'- cGUCGUCGCCCugaaCGUCaCGGa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.