miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23706 5' -57.5 NC_005261.1 + 34779 0.7 0.59987
Target:  5'- gGCGGCAGCGcGGgagGCggcgGCGGccaucGCCUCGa -3'
miRNA:   3'- -CGUCGUCGC-CC---UGaa--CGUCa----CGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 7760 0.7 0.59987
Target:  5'- aCAGCGcGCGGGGCgcGC-GUGCgCUCGc -3'
miRNA:   3'- cGUCGU-CGCCCUGaaCGuCACG-GAGC- -5'
23706 5' -57.5 NC_005261.1 + 40336 0.7 0.608064
Target:  5'- cGCgGGCGGCGGGACcgcgggcggcgGguGUGuCCUUGg -3'
miRNA:   3'- -CG-UCGUCGCCCUGaa---------CguCAC-GGAGC- -5'
23706 5' -57.5 NC_005261.1 + 8660 0.7 0.610115
Target:  5'- uGCAGCGGCaGGGCg-GCGGgGCC-CGg -3'
miRNA:   3'- -CGUCGUCGcCCUGaaCGUCaCGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 92763 0.7 0.610115
Target:  5'- cGCGGCgcGGCGGGcccGCgccggaGCAGUGCCcagCGg -3'
miRNA:   3'- -CGUCG--UCGCCC---UGaa----CGUCACGGa--GC- -5'
23706 5' -57.5 NC_005261.1 + 133988 0.7 0.610115
Target:  5'- gGCGGCGGCGGcGcGCUgccggGcCAG-GCCUCGc -3'
miRNA:   3'- -CGUCGUCGCC-C-UGAa----C-GUCaCGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 82228 0.7 0.61114
Target:  5'- gGCAGCGGCGGGGCccGCGGggaggacgacgcgcgGgCUCc -3'
miRNA:   3'- -CGUCGUCGCCCUGaaCGUCa--------------CgGAGc -5'
23706 5' -57.5 NC_005261.1 + 78662 0.69 0.630646
Target:  5'- gGCGGCAGCGGcGGCgcGCGGccGcCCUCc -3'
miRNA:   3'- -CGUCGUCGCC-CUGaaCGUCa-C-GGAGc -5'
23706 5' -57.5 NC_005261.1 + 55528 0.69 0.630646
Target:  5'- cCAGCgaaGGCGGcGACggcgcugGCGGUGgCCUCGc -3'
miRNA:   3'- cGUCG---UCGCC-CUGaa-----CGUCAC-GGAGC- -5'
23706 5' -57.5 NC_005261.1 + 124035 0.69 0.63989
Target:  5'- gGCAGCAGCcgcggccGGGGCggcGCGGUGgCC-CGc -3'
miRNA:   3'- -CGUCGUCG-------CCCUGaa-CGUCAC-GGaGC- -5'
23706 5' -57.5 NC_005261.1 + 125966 0.69 0.640917
Target:  5'- aGgGGCGGCGgaGGGCUUGCGGcgucgGCCgcgUCGg -3'
miRNA:   3'- -CgUCGUCGC--CCUGAACGUCa----CGG---AGC- -5'
23706 5' -57.5 NC_005261.1 + 6461 0.69 0.640917
Target:  5'- gGC-GCGcGCGGGACc-GCGGUGCC-CGc -3'
miRNA:   3'- -CGuCGU-CGCCCUGaaCGUCACGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 17002 0.69 0.640917
Target:  5'- cGCGGCGGCGGcGCcUGCccgAGUGCgaCGg -3'
miRNA:   3'- -CGUCGUCGCCcUGaACG---UCACGgaGC- -5'
23706 5' -57.5 NC_005261.1 + 81587 0.69 0.66143
Target:  5'- cCGGCAGCGGGccACggUGUuccuGGUGCCgCGg -3'
miRNA:   3'- cGUCGUCGCCC--UGa-ACG----UCACGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 40646 0.69 0.671655
Target:  5'- gGCAGgGGCGGGGCgggcucgGCGGcgcgGCCggcaUCGa -3'
miRNA:   3'- -CGUCgUCGCCCUGaa-----CGUCa---CGG----AGC- -5'
23706 5' -57.5 NC_005261.1 + 138002 0.68 0.681848
Target:  5'- gGCGGCGGCGGcGGCggcgGCAGcgGuCCUgGu -3'
miRNA:   3'- -CGUCGUCGCC-CUGaa--CGUCa-C-GGAgC- -5'
23706 5' -57.5 NC_005261.1 + 331 0.68 0.681848
Target:  5'- gGCGGCGGCGGcGGCggcgGCAGcgGuCCUgGu -3'
miRNA:   3'- -CGUCGUCGCC-CUGaa--CGUCa-C-GGAgC- -5'
23706 5' -57.5 NC_005261.1 + 110937 0.68 0.702101
Target:  5'- gGCGGCGggccgccccGCGGGGCggGCAG-GcCCUCc -3'
miRNA:   3'- -CGUCGU---------CGCCCUGaaCGUCaC-GGAGc -5'
23706 5' -57.5 NC_005261.1 + 117834 0.68 0.712142
Target:  5'- cGUGGCGGCGGG-CUgcgcaGCGGcGCCggCGg -3'
miRNA:   3'- -CGUCGUCGCCCuGAa----CGUCaCGGa-GC- -5'
23706 5' -57.5 NC_005261.1 + 57513 0.68 0.722116
Target:  5'- uCAGCcGCGcGGGCUUcaGCGGcGCCUCc -3'
miRNA:   3'- cGUCGuCGC-CCUGAA--CGUCaCGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.