miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23706 5' -57.5 NC_005261.1 + 33385 0.78 0.213199
Target:  5'- gGCGGCGGuCGGGGCgccaggGCGGUGuCCUCu -3'
miRNA:   3'- -CGUCGUC-GCCCUGaa----CGUCAC-GGAGc -5'
23706 5' -57.5 NC_005261.1 + 34111 0.66 0.816036
Target:  5'- gGCGGCugcGCGGGcCUcGCAG-GCC-CGc -3'
miRNA:   3'- -CGUCGu--CGCCCuGAaCGUCaCGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 34524 0.73 0.443421
Target:  5'- gGCGGCGGCGGGGCg-GCGccGCCgggCGg -3'
miRNA:   3'- -CGUCGUCGCCCUGaaCGUcaCGGa--GC- -5'
23706 5' -57.5 NC_005261.1 + 34779 0.7 0.59987
Target:  5'- gGCGGCAGCGcGGgagGCggcgGCGGccaucGCCUCGa -3'
miRNA:   3'- -CGUCGUCGC-CC---UGaa--CGUCa----CGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 37647 0.66 0.816036
Target:  5'- cGCGGCGGCGcgcGGcacgaGCUUGaAGUagGCCUCGu -3'
miRNA:   3'- -CGUCGUCGC---CC-----UGAACgUCA--CGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 38203 0.66 0.824647
Target:  5'- cGUGGCGGCGGGGCagcGUGGcgGCCa-- -3'
miRNA:   3'- -CGUCGUCGCCCUGaa-CGUCa-CGGagc -5'
23706 5' -57.5 NC_005261.1 + 40336 0.7 0.608064
Target:  5'- cGCgGGCGGCGGGACcgcgggcggcgGguGUGuCCUUGg -3'
miRNA:   3'- -CG-UCGUCGCCCUGaa---------CguCAC-GGAGC- -5'
23706 5' -57.5 NC_005261.1 + 40440 0.66 0.798318
Target:  5'- gGCGGCaacgagggaGGUGGcGGCggaGCGGUGCC-CGg -3'
miRNA:   3'- -CGUCG---------UCGCC-CUGaa-CGUCACGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 40646 0.69 0.671655
Target:  5'- gGCAGgGGCGGGGCgggcucgGCGGcgcgGCCggcaUCGa -3'
miRNA:   3'- -CGUCgUCGCCCUGaa-----CGUCa---CGG----AGC- -5'
23706 5' -57.5 NC_005261.1 + 40721 0.66 0.824647
Target:  5'- cCGGCGuccGCGGGGCUuggGCGGggcUGCCggggCGg -3'
miRNA:   3'- cGUCGU---CGCCCUGAa--CGUC---ACGGa---GC- -5'
23706 5' -57.5 NC_005261.1 + 42583 0.68 0.732011
Target:  5'- gGCGcCGGCgGGGGCUcGCGGU-CCUCGc -3'
miRNA:   3'- -CGUcGUCG-CCCUGAaCGUCAcGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 44710 0.78 0.207987
Target:  5'- gGCGGCgccGGCGGGGCgccgGCgGGUGCCUCu -3'
miRNA:   3'- -CGUCG---UCGCCCUGaa--CG-UCACGGAGc -5'
23706 5' -57.5 NC_005261.1 + 44837 0.66 0.833082
Target:  5'- cCAGUAGCGGucGACg-GCGGUGCggCGg -3'
miRNA:   3'- cGUCGUCGCC--CUGaaCGUCACGgaGC- -5'
23706 5' -57.5 NC_005261.1 + 49576 0.67 0.761137
Target:  5'- cCGGCGGCGGGGCg-GCGGcgcgcgccgGCC-CGg -3'
miRNA:   3'- cGUCGUCGCCCUGaaCGUCa--------CGGaGC- -5'
23706 5' -57.5 NC_005261.1 + 51884 0.66 0.816036
Target:  5'- --uGCGGCaGGGGCUUGCcGU-CCUUGu -3'
miRNA:   3'- cguCGUCG-CCCUGAACGuCAcGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 54264 0.77 0.240963
Target:  5'- gGCAGCgGGCGGGgucGCUgGCGG-GCCUCGg -3'
miRNA:   3'- -CGUCG-UCGCCC---UGAaCGUCaCGGAGC- -5'
23706 5' -57.5 NC_005261.1 + 55313 0.67 0.761137
Target:  5'- cGCGGCGGcCGGcGCUUcCAGcGCCUCc -3'
miRNA:   3'- -CGUCGUC-GCCcUGAAcGUCaCGGAGc -5'
23706 5' -57.5 NC_005261.1 + 55528 0.69 0.630646
Target:  5'- cCAGCgaaGGCGGcGACggcgcugGCGGUGgCCUCGc -3'
miRNA:   3'- cGUCG---UCGCC-CUGaa-----CGUCAC-GGAGC- -5'
23706 5' -57.5 NC_005261.1 + 57513 0.68 0.722116
Target:  5'- uCAGCcGCGcGGGCUUcaGCGGcGCCUCc -3'
miRNA:   3'- cGUCGuCGC-CCUGAA--CGUCaCGGAGc -5'
23706 5' -57.5 NC_005261.1 + 63510 0.66 0.798318
Target:  5'- cGCGGCGGCGGcGGCggagucgGCGGcccgcgcugGCCgcgCGg -3'
miRNA:   3'- -CGUCGUCGCC-CUGaa-----CGUCa--------CGGa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.