miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23708 3' -57.3 NC_005261.1 + 58567 0.66 0.842725
Target:  5'- gCGCGGCgGCGCGGcGGCCag-Cg--- -3'
miRNA:   3'- -GUGCCGgUGCGCCuUCGGguaGaaca -5'
23708 3' -57.3 NC_005261.1 + 124758 0.66 0.842725
Target:  5'- gUACGGCugCACGCGGAAGCgCGc----- -3'
miRNA:   3'- -GUGCCG--GUGCGCCUUCGgGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 48162 0.66 0.842725
Target:  5'- gCGCGGCgG-GCGGgcGCgCCGUCggGUa -3'
miRNA:   3'- -GUGCCGgUgCGCCuuCG-GGUAGaaCA- -5'
23708 3' -57.3 NC_005261.1 + 55094 0.66 0.841912
Target:  5'- gCACGGCUGCGCGGGgucgugcAGCUCGg----- -3'
miRNA:   3'- -GUGCCGGUGCGCCU-------UCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 56480 0.66 0.840281
Target:  5'- aCGCGGCCAgcuccuccuugaggUGCGGGagcaGGCCCAcguUCUc-- -3'
miRNA:   3'- -GUGCCGGU--------------GCGCCU----UCGGGU---AGAaca -5'
23708 3' -57.3 NC_005261.1 + 123408 0.66 0.834513
Target:  5'- gCGCGGCCGCGCcGGccgcGCCCGgagCgcgGg -3'
miRNA:   3'- -GUGCCGGUGCG-CCuu--CGGGUa--Gaa-Ca -5'
23708 3' -57.3 NC_005261.1 + 100112 0.66 0.834513
Target:  5'- gGCGGCuggugCACGCGGugcuGGCCCGcCUg-- -3'
miRNA:   3'- gUGCCG-----GUGCGCCu---UCGGGUaGAaca -5'
23708 3' -57.3 NC_005261.1 + 84309 0.66 0.834513
Target:  5'- --aGGCCGCGCGGAccGCCaCGUUg--- -3'
miRNA:   3'- gugCCGGUGCGCCUu-CGG-GUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 80491 0.66 0.834513
Target:  5'- gACGGCCAccgcguCGCGGAagacGGCCCGc----- -3'
miRNA:   3'- gUGCCGGU------GCGCCU----UCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 52449 0.66 0.834513
Target:  5'- gGCGGCCAgggcgcCGCGGAAGCUgG-CgUGg -3'
miRNA:   3'- gUGCCGGU------GCGCCUUCGGgUaGaACa -5'
23708 3' -57.3 NC_005261.1 + 52333 0.66 0.826115
Target:  5'- cCACGGCgGCGCGGuacguGGCCUG-CaUGa -3'
miRNA:   3'- -GUGCCGgUGCGCCu----UCGGGUaGaACa -5'
23708 3' -57.3 NC_005261.1 + 91446 0.66 0.826115
Target:  5'- aCGCGGCC-CGCGGGccAGUCCGc----- -3'
miRNA:   3'- -GUGCCGGuGCGCCU--UCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 63070 0.66 0.826115
Target:  5'- -uCGGCgGCGCGcGGAGCCCug--UGa -3'
miRNA:   3'- guGCCGgUGCGC-CUUCGGGuagaACa -5'
23708 3' -57.3 NC_005261.1 + 33871 0.66 0.81754
Target:  5'- gGCGGCCGCGaCGGcGGCCgccaccaggcgCAgCUUGg -3'
miRNA:   3'- gUGCCGGUGC-GCCuUCGG-----------GUaGAACa -5'
23708 3' -57.3 NC_005261.1 + 57717 0.66 0.81754
Target:  5'- uGCGcGCCGuCGCGGA-GCCCGUa---- -3'
miRNA:   3'- gUGC-CGGU-GCGCCUuCGGGUAgaaca -5'
23708 3' -57.3 NC_005261.1 + 62269 0.66 0.81754
Target:  5'- cCGC-GCCGCGCcGgcGCCCGUCgUGg -3'
miRNA:   3'- -GUGcCGGUGCGcCuuCGGGUAGaACa -5'
23708 3' -57.3 NC_005261.1 + 90704 0.66 0.81754
Target:  5'- gCACGGCCGCccGCGGc-GCCgCGUCg--- -3'
miRNA:   3'- -GUGCCGGUG--CGCCuuCGG-GUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 78039 0.66 0.808796
Target:  5'- cCGCGGCCGCGCGccAGGCagugCUUGg -3'
miRNA:   3'- -GUGCCGGUGCGCc-UUCGgguaGAACa -5'
23708 3' -57.3 NC_005261.1 + 104601 0.66 0.808796
Target:  5'- gCugGGCCccGCGCGGGcggcgGGCUUGUCUUu- -3'
miRNA:   3'- -GugCCGG--UGCGCCU-----UCGGGUAGAAca -5'
23708 3' -57.3 NC_005261.1 + 115173 0.66 0.808796
Target:  5'- gGCGGCCGCGCGcaaAAGCCgGUg---- -3'
miRNA:   3'- gUGCCGGUGCGCc--UUCGGgUAgaaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.