miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23708 3' -57.3 NC_005261.1 + 71260 0.68 0.723906
Target:  5'- gGCGGCCcgacCGCGGc-GCCCGUUUUa- -3'
miRNA:   3'- gUGCCGGu---GCGCCuuCGGGUAGAAca -5'
23708 3' -57.3 NC_005261.1 + 89222 0.68 0.723906
Target:  5'- gGCGGCCACgGCGGGgugcucggccaGGCCC-UCg--- -3'
miRNA:   3'- gUGCCGGUG-CGCCU-----------UCGGGuAGaaca -5'
23708 3' -57.3 NC_005261.1 + 97666 0.68 0.713953
Target:  5'- gGgGGgCGCGUGGGcguAGCCCAUCagcgUGUa -3'
miRNA:   3'- gUgCCgGUGCGCCU---UCGGGUAGa---ACA- -5'
23708 3' -57.3 NC_005261.1 + 103336 0.68 0.713953
Target:  5'- gGCGGCCGCGCGGcGG-CgGUCUc-- -3'
miRNA:   3'- gUGCCGGUGCGCCuUCgGgUAGAaca -5'
23708 3' -57.3 NC_005261.1 + 4999 0.68 0.70393
Target:  5'- cCACGGgCGCGCGGcccaaaacaAGGCCCGcUCgcuggUGUc -3'
miRNA:   3'- -GUGCCgGUGCGCC---------UUCGGGU-AGa----ACA- -5'
23708 3' -57.3 NC_005261.1 + 123093 0.68 0.70393
Target:  5'- uCGCGGCCuccggguCGuCGGAgccgGGCCCGUCg--- -3'
miRNA:   3'- -GUGCCGGu------GC-GCCU----UCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 41179 0.68 0.693846
Target:  5'- cCGCGGCCACGCucGGAggcgcuggcgccGGCCCGgccggCUggGUc -3'
miRNA:   3'- -GUGCCGGUGCG--CCU------------UCGGGUa----GAa-CA- -5'
23708 3' -57.3 NC_005261.1 + 41257 0.68 0.693846
Target:  5'- cCGCGGCCACGCucGGAggcgcuggcgccGGCCCGgccggCUggGUc -3'
miRNA:   3'- -GUGCCGGUGCG--CCU------------UCGGGUa----GAa-CA- -5'
23708 3' -57.3 NC_005261.1 + 59070 0.68 0.693846
Target:  5'- gAUGGCCAUGuuGccGUCCGUCUUGa -3'
miRNA:   3'- gUGCCGGUGCgcCuuCGGGUAGAACa -5'
23708 3' -57.3 NC_005261.1 + 37289 0.68 0.723906
Target:  5'- gCGCGGCCGCGCGcgccuuGgcGCCC-UCgUGg -3'
miRNA:   3'- -GUGCCGGUGCGC------CuuCGGGuAGaACa -5'
23708 3' -57.3 NC_005261.1 + 31247 0.68 0.723906
Target:  5'- cCACGGCCGCGgccaUGGAGGCggccagcgccuCCGUCUcGg -3'
miRNA:   3'- -GUGCCGGUGC----GCCUUCG-----------GGUAGAaCa -5'
23708 3' -57.3 NC_005261.1 + 50627 0.68 0.743564
Target:  5'- cCGCGGgcCCugGCGcGAGGgucaCCGUCUUGg -3'
miRNA:   3'- -GUGCC--GGugCGC-CUUCg---GGUAGAACa -5'
23708 3' -57.3 NC_005261.1 + 51907 0.68 0.743564
Target:  5'- aCGCGGCCGgGCcGgcGCCUGUCUg-- -3'
miRNA:   3'- -GUGCCGGUgCGcCuuCGGGUAGAaca -5'
23708 3' -57.3 NC_005261.1 + 69395 0.68 0.743564
Target:  5'- --gGGCCGCGCGGgcGCCgCggCUUcGUu -3'
miRNA:   3'- gugCCGGUGCGCCuuCGG-GuaGAA-CA- -5'
23708 3' -57.3 NC_005261.1 + 44866 0.68 0.743564
Target:  5'- -uUGGCCGCGaGGAAGCCCGc----- -3'
miRNA:   3'- guGCCGGUGCgCCUUCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 92164 0.68 0.743564
Target:  5'- --aGGCCGCGUGGAcgAGCgCGUCg--- -3'
miRNA:   3'- gugCCGGUGCGCCU--UCGgGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 23752 0.68 0.73378
Target:  5'- aCGCGcGCCGCGCGGcAGUCaUAUaCUUGa -3'
miRNA:   3'- -GUGC-CGGUGCGCCuUCGG-GUA-GAACa -5'
23708 3' -57.3 NC_005261.1 + 83401 0.68 0.73378
Target:  5'- uUACGGCCACGcCGGcGGCCUcgUg--- -3'
miRNA:   3'- -GUGCCGGUGC-GCCuUCGGGuaGaaca -5'
23708 3' -57.3 NC_005261.1 + 37784 0.68 0.723906
Target:  5'- aCGCGGCCGCGCaGGugcAGGUCCcgCUc-- -3'
miRNA:   3'- -GUGCCGGUGCG-CC---UUCGGGuaGAaca -5'
23708 3' -57.3 NC_005261.1 + 109594 0.68 0.723906
Target:  5'- uCGCGGCCGCgGCGGAGGCagCCGc----- -3'
miRNA:   3'- -GUGCCGGUG-CGCCUUCG--GGUagaaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.