miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23708 3' -57.3 NC_005261.1 + 88915 0.69 0.632563
Target:  5'- gCGCaGGCCGCGCGGAAGCUg------- -3'
miRNA:   3'- -GUG-CCGGUGCGCCUUCGGguagaaca -5'
23708 3' -57.3 NC_005261.1 + 124027 0.69 0.632563
Target:  5'- cCGCGGCCggggcgGCGCGGuGGCCCGcaUCg--- -3'
miRNA:   3'- -GUGCCGG------UGCGCCuUCGGGU--AGaaca -5'
23708 3' -57.3 NC_005261.1 + 108988 0.69 0.636669
Target:  5'- gGCGGCCGCGCGcuacgcggcggccgcGggGCCCG-CggccgUGUu -3'
miRNA:   3'- gUGCCGGUGCGC---------------CuuCGGGUaGa----ACA- -5'
23708 3' -57.3 NC_005261.1 + 136912 0.69 0.653081
Target:  5'- gCGCGGCCGCGCaGAAGgCCAc----- -3'
miRNA:   3'- -GUGCCGGUGCGcCUUCgGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 34111 0.69 0.672512
Target:  5'- gGCGGCUGCGCGGGccucgcaGGCCCGc----- -3'
miRNA:   3'- gUGCCGGUGCGCCU-------UCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 6463 0.69 0.672512
Target:  5'- -uUGGCgCGCGCGGGAccgcggugcccgcGCCCGUCUa-- -3'
miRNA:   3'- guGCCG-GUGCGCCUU-------------CGGGUAGAaca -5'
23708 3' -57.3 NC_005261.1 + 74267 0.69 0.683711
Target:  5'- gCACGuGCCGCGCGGccGCCagcgCGUCcUGg -3'
miRNA:   3'- -GUGC-CGGUGCGCCuuCGG----GUAGaACa -5'
23708 3' -57.3 NC_005261.1 + 99832 0.69 0.683711
Target:  5'- gCGCGGCCAUGCGGcggguuGAGCCaAUCc--- -3'
miRNA:   3'- -GUGCCGGUGCGCC------UUCGGgUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 26215 0.69 0.683711
Target:  5'- -cCGGCCGCGCGcGggGCUCG-CUg-- -3'
miRNA:   3'- guGCCGGUGCGC-CuuCGGGUaGAaca -5'
23708 3' -57.3 NC_005261.1 + 72857 0.7 0.581396
Target:  5'- gCGCGGCCGCGCGGGcagcAGCgCGUg---- -3'
miRNA:   3'- -GUGCCGGUGCGCCU----UCGgGUAgaaca -5'
23708 3' -57.3 NC_005261.1 + 39653 0.7 0.581396
Target:  5'- aCGCGGCCGCGCGGGcguuGGCCgCGc----- -3'
miRNA:   3'- -GUGCCGGUGCGCCU----UCGG-GUagaaca -5'
23708 3' -57.3 NC_005261.1 + 64788 0.7 0.591585
Target:  5'- gGCGGCCGCgaGCGcGcGGCCCGUCg--- -3'
miRNA:   3'- gUGCCGGUG--CGC-CuUCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 13631 0.7 0.598735
Target:  5'- aGCGGCCGCcuccaggcugaggaGCGGggGCCCuUCc--- -3'
miRNA:   3'- gUGCCGGUG--------------CGCCuuCGGGuAGaaca -5'
23708 3' -57.3 NC_005261.1 + 29059 0.7 0.601803
Target:  5'- gCGCGGCCGCGgGGucggcGGCCgCGUCg--- -3'
miRNA:   3'- -GUGCCGGUGCgCCu----UCGG-GUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 126243 0.7 0.601803
Target:  5'- gGCGGCCGCGCaGGccccAAGCCCcgCa--- -3'
miRNA:   3'- gUGCCGGUGCG-CC----UUCGGGuaGaaca -5'
23708 3' -57.3 NC_005261.1 + 96187 0.7 0.612044
Target:  5'- cCACGgcGCCGCGCGGgcGCCCcgCc--- -3'
miRNA:   3'- -GUGC--CGGUGCGCCuuCGGGuaGaaca -5'
23708 3' -57.3 NC_005261.1 + 135804 0.7 0.6223
Target:  5'- gGCGGCaCGCgGCGGAAGCCgcCGUCg--- -3'
miRNA:   3'- gUGCCG-GUG-CGCCUUCGG--GUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 38676 0.7 0.6223
Target:  5'- cCACGGUCGCGCGcGuGGCCgCGUCa--- -3'
miRNA:   3'- -GUGCCGGUGCGC-CuUCGG-GUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 103467 0.71 0.561136
Target:  5'- gCGCGGCCACGCGGGgggcGGCCgGc----- -3'
miRNA:   3'- -GUGCCGGUGCGCCU----UCGGgUagaaca -5'
23708 3' -57.3 NC_005261.1 + 57194 0.71 0.531132
Target:  5'- gCACGGCCGCGCGGGcgcgAGCCgGa----- -3'
miRNA:   3'- -GUGCCGGUGCGCCU----UCGGgUagaaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.