Results 81 - 88 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23708 | 3' | -57.3 | NC_005261.1 | + | 103467 | 0.71 | 0.561136 |
Target: 5'- gCGCGGCCACGCGGGgggcGGCCgGc----- -3' miRNA: 3'- -GUGCCGGUGCGCCU----UCGGgUagaaca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 72079 | 0.71 | 0.571244 |
Target: 5'- gCACGGCCACcgagGCGGccgugcAGCCCAcgaggucugcgaUCUUGg -3' miRNA: 3'- -GUGCCGGUG----CGCCu-----UCGGGU------------AGAACa -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 76086 | 0.72 | 0.511455 |
Target: 5'- gCGCGGgCGCGCGGcGGCCCcgCg--- -3' miRNA: 3'- -GUGCCgGUGCGCCuUCGGGuaGaaca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 23380 | 0.73 | 0.454417 |
Target: 5'- -cCGGCCcCGCGGAGGCCuCGUCc--- -3' miRNA: 3'- guGCCGGuGCGCCUUCGG-GUAGaaca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 95743 | 0.73 | 0.436177 |
Target: 5'- cCGCGGCCGCGCGGAaccAGCCaagCg--- -3' miRNA: 3'- -GUGCCGGUGCGCCU---UCGGguaGaaca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 117173 | 0.73 | 0.409628 |
Target: 5'- -cCGGCCGCGaCGGcGGGCCCGUCggcUGg -3' miRNA: 3'- guGCCGGUGC-GCC-UUCGGGUAGa--ACa -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 7800 | 0.74 | 0.367691 |
Target: 5'- gCGCGGCCcCGCGccuGGCCCGUCUUu- -3' miRNA: 3'- -GUGCCGGuGCGCcu-UCGGGUAGAAca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 16218 | 0.75 | 0.321396 |
Target: 5'- cCGCGGCCACGauGgcGCCCGUCa--- -3' miRNA: 3'- -GUGCCGGUGCgcCuuCGGGUAGaaca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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