miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23708 3' -57.3 NC_005261.1 + 103336 0.68 0.713953
Target:  5'- gGCGGCCGCGCGGcGG-CgGUCUc-- -3'
miRNA:   3'- gUGCCGGUGCGCCuUCgGgUAGAaca -5'
23708 3' -57.3 NC_005261.1 + 4999 0.68 0.70393
Target:  5'- cCACGGgCGCGCGGcccaaaacaAGGCCCGcUCgcuggUGUc -3'
miRNA:   3'- -GUGCCgGUGCGCC---------UUCGGGU-AGa----ACA- -5'
23708 3' -57.3 NC_005261.1 + 92164 0.68 0.743564
Target:  5'- --aGGCCGCGUGGAcgAGCgCGUCg--- -3'
miRNA:   3'- gugCCGGUGCGCCU--UCGgGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 44866 0.68 0.743564
Target:  5'- -uUGGCCGCGaGGAAGCCCGc----- -3'
miRNA:   3'- guGCCGGUGCgCCUUCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 69395 0.68 0.743564
Target:  5'- --gGGCCGCGCGGgcGCCgCggCUUcGUu -3'
miRNA:   3'- gugCCGGUGCGCCuuCGG-GuaGAA-CA- -5'
23708 3' -57.3 NC_005261.1 + 97666 0.68 0.713953
Target:  5'- gGgGGgCGCGUGGGcguAGCCCAUCagcgUGUa -3'
miRNA:   3'- gUgCCgGUGCGCCU---UCGGGUAGa---ACA- -5'
23708 3' -57.3 NC_005261.1 + 50627 0.68 0.743564
Target:  5'- cCGCGGgcCCugGCGcGAGGgucaCCGUCUUGg -3'
miRNA:   3'- -GUGCC--GGugCGC-CUUCg---GGUAGAACa -5'
23708 3' -57.3 NC_005261.1 + 51907 0.68 0.743564
Target:  5'- aCGCGGCCGgGCcGgcGCCUGUCUg-- -3'
miRNA:   3'- -GUGCCGGUgCGcCuuCGGGUAGAaca -5'
23708 3' -57.3 NC_005261.1 + 40850 0.67 0.753251
Target:  5'- gGCGGCCcCgGCGGugccGGCCCGUCc--- -3'
miRNA:   3'- gUGCCGGuG-CGCCu---UCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 6215 0.67 0.79989
Target:  5'- gGCaGCgCGgGCGGggGCCCGcauugCUUGg -3'
miRNA:   3'- gUGcCG-GUgCGCCuuCGGGUa----GAACa -5'
23708 3' -57.3 NC_005261.1 + 66613 0.67 0.798991
Target:  5'- cCGCGGCCcgcucgcagcugaGCGCGGcccGGCCCGUg---- -3'
miRNA:   3'- -GUGCCGG-------------UGCGCCu--UCGGGUAgaaca -5'
23708 3' -57.3 NC_005261.1 + 12312 0.67 0.790832
Target:  5'- -cCGGCCucgGCGGGcgcGCCCAUCUUc- -3'
miRNA:   3'- guGCCGGug-CGCCUu--CGGGUAGAAca -5'
23708 3' -57.3 NC_005261.1 + 21873 0.67 0.790832
Target:  5'- cCGCGGCgGCGCG-AGGCCCGc----- -3'
miRNA:   3'- -GUGCCGgUGCGCcUUCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 125618 0.67 0.790832
Target:  5'- gGCGGUgGCG-GGggGCUCGUCg--- -3'
miRNA:   3'- gUGCCGgUGCgCCuuCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 94532 0.67 0.785328
Target:  5'- aCGCGGCCgcgucguccucggcgGCGCGGcugaucAAGCUCAUCg--- -3'
miRNA:   3'- -GUGCCGG---------------UGCGCC------UUCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 19333 0.67 0.78163
Target:  5'- cCGCGGCCGCGCGuGugcuuucguGGCCCGg----- -3'
miRNA:   3'- -GUGCCGGUGCGC-Cu--------UCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 108179 0.67 0.771353
Target:  5'- gGCGGCCGCGCuGGcggcgcgaaccguGGCCCcgCUg-- -3'
miRNA:   3'- gUGCCGGUGCGcCU-------------UCGGGuaGAaca -5'
23708 3' -57.3 NC_005261.1 + 46078 0.67 0.76283
Target:  5'- aGC-GCCGCGCGGuccgcgcGGCCCAUCc--- -3'
miRNA:   3'- gUGcCGGUGCGCCu------UCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 11497 0.67 0.76283
Target:  5'- gCAgGGCCcuCGgGGAAGCCCAgCUcgGUc -3'
miRNA:   3'- -GUgCCGGu-GCgCCUUCGGGUaGAa-CA- -5'
23708 3' -57.3 NC_005261.1 + 109557 0.67 0.753251
Target:  5'- gGCGGCCGCgGCuGAGGCggCCGUCgUGg -3'
miRNA:   3'- gUGCCGGUG-CGcCUUCG--GGUAGaACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.