miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23708 3' -57.3 NC_005261.1 + 16218 0.75 0.321396
Target:  5'- cCGCGGCCACGauGgcGCCCGUCa--- -3'
miRNA:   3'- -GUGCCGGUGCgcCuuCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 7800 0.74 0.367691
Target:  5'- gCGCGGCCcCGCGccuGGCCCGUCUUu- -3'
miRNA:   3'- -GUGCCGGuGCGCcu-UCGGGUAGAAca -5'
23708 3' -57.3 NC_005261.1 + 117173 0.73 0.409628
Target:  5'- -cCGGCCGCGaCGGcGGGCCCGUCggcUGg -3'
miRNA:   3'- guGCCGGUGC-GCC-UUCGGGUAGa--ACa -5'
23708 3' -57.3 NC_005261.1 + 95743 0.73 0.436177
Target:  5'- cCGCGGCCGCGCGGAaccAGCCaagCg--- -3'
miRNA:   3'- -GUGCCGGUGCGCCU---UCGGguaGaaca -5'
23708 3' -57.3 NC_005261.1 + 23380 0.73 0.454417
Target:  5'- -cCGGCCcCGCGGAGGCCuCGUCc--- -3'
miRNA:   3'- guGCCGGuGCGCCUUCGG-GUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 76086 0.72 0.511455
Target:  5'- gCGCGGgCGCGCGGcGGCCCcgCg--- -3'
miRNA:   3'- -GUGCCgGUGCGCCuUCGGGuaGaaca -5'
23708 3' -57.3 NC_005261.1 + 15154 0.71 0.521257
Target:  5'- aGCGGCCgcccagGCGCGGGccccGCCCAUCgcccgUGa -3'
miRNA:   3'- gUGCCGG------UGCGCCUu---CGGGUAGa----ACa -5'
23708 3' -57.3 NC_005261.1 + 57194 0.71 0.531132
Target:  5'- gCACGGCCGCGCGGGcgcgAGCCgGa----- -3'
miRNA:   3'- -GUGCCGGUGCGCCU----UCGGgUagaaca -5'
23708 3' -57.3 NC_005261.1 + 103467 0.71 0.561136
Target:  5'- gCGCGGCCACGCGGGgggcGGCCgGc----- -3'
miRNA:   3'- -GUGCCGGUGCGCCU----UCGGgUagaaca -5'
23708 3' -57.3 NC_005261.1 + 72079 0.71 0.571244
Target:  5'- gCACGGCCACcgagGCGGccgugcAGCCCAcgaggucugcgaUCUUGg -3'
miRNA:   3'- -GUGCCGGUG----CGCCu-----UCGGGU------------AGAACa -5'
23708 3' -57.3 NC_005261.1 + 72857 0.7 0.581396
Target:  5'- gCGCGGCCGCGCGGGcagcAGCgCGUg---- -3'
miRNA:   3'- -GUGCCGGUGCGCCU----UCGgGUAgaaca -5'
23708 3' -57.3 NC_005261.1 + 39653 0.7 0.581396
Target:  5'- aCGCGGCCGCGCGGGcguuGGCCgCGc----- -3'
miRNA:   3'- -GUGCCGGUGCGCCU----UCGG-GUagaaca -5'
23708 3' -57.3 NC_005261.1 + 64788 0.7 0.591585
Target:  5'- gGCGGCCGCgaGCGcGcGGCCCGUCg--- -3'
miRNA:   3'- gUGCCGGUG--CGC-CuUCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 13631 0.7 0.598735
Target:  5'- aGCGGCCGCcuccaggcugaggaGCGGggGCCCuUCc--- -3'
miRNA:   3'- gUGCCGGUG--------------CGCCuuCGGGuAGaaca -5'
23708 3' -57.3 NC_005261.1 + 29059 0.7 0.601803
Target:  5'- gCGCGGCCGCGgGGucggcGGCCgCGUCg--- -3'
miRNA:   3'- -GUGCCGGUGCgCCu----UCGG-GUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 126243 0.7 0.601803
Target:  5'- gGCGGCCGCGCaGGccccAAGCCCcgCa--- -3'
miRNA:   3'- gUGCCGGUGCG-CC----UUCGGGuaGaaca -5'
23708 3' -57.3 NC_005261.1 + 96187 0.7 0.612044
Target:  5'- cCACGgcGCCGCGCGGgcGCCCcgCc--- -3'
miRNA:   3'- -GUGC--CGGUGCGCCuuCGGGuaGaaca -5'
23708 3' -57.3 NC_005261.1 + 38676 0.7 0.6223
Target:  5'- cCACGGUCGCGCGcGuGGCCgCGUCa--- -3'
miRNA:   3'- -GUGCCGGUGCGC-CuUCGG-GUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 135804 0.7 0.6223
Target:  5'- gGCGGCaCGCgGCGGAAGCCgcCGUCg--- -3'
miRNA:   3'- gUGCCG-GUG-CGCCUUCGG--GUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 88915 0.69 0.632563
Target:  5'- gCGCaGGCCGCGCGGAAGCUg------- -3'
miRNA:   3'- -GUG-CCGGUGCGCCUUCGGguagaaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.