miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23708 3' -57.3 NC_005261.1 + 124027 0.69 0.632563
Target:  5'- cCGCGGCCggggcgGCGCGGuGGCCCGcaUCg--- -3'
miRNA:   3'- -GUGCCGG------UGCGCCuUCGGGU--AGaaca -5'
23708 3' -57.3 NC_005261.1 + 108988 0.69 0.636669
Target:  5'- gGCGGCCGCGCGcuacgcggcggccgcGggGCCCG-CggccgUGUu -3'
miRNA:   3'- gUGCCGGUGCGC---------------CuuCGGGUaGa----ACA- -5'
23708 3' -57.3 NC_005261.1 + 136912 0.69 0.653081
Target:  5'- gCGCGGCCGCGCaGAAGgCCAc----- -3'
miRNA:   3'- -GUGCCGGUGCGcCUUCgGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 6463 0.69 0.672512
Target:  5'- -uUGGCgCGCGCGGGAccgcggugcccgcGCCCGUCUa-- -3'
miRNA:   3'- guGCCG-GUGCGCCUU-------------CGGGUAGAaca -5'
23708 3' -57.3 NC_005261.1 + 34111 0.69 0.672512
Target:  5'- gGCGGCUGCGCGGGccucgcaGGCCCGc----- -3'
miRNA:   3'- gUGCCGGUGCGCCU-------UCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 74267 0.69 0.683711
Target:  5'- gCACGuGCCGCGCGGccGCCagcgCGUCcUGg -3'
miRNA:   3'- -GUGC-CGGUGCGCCuuCGG----GUAGaACa -5'
23708 3' -57.3 NC_005261.1 + 99832 0.69 0.683711
Target:  5'- gCGCGGCCAUGCGGcggguuGAGCCaAUCc--- -3'
miRNA:   3'- -GUGCCGGUGCGCC------UUCGGgUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 26215 0.69 0.683711
Target:  5'- -cCGGCCGCGCGcGggGCUCG-CUg-- -3'
miRNA:   3'- guGCCGGUGCGC-CuuCGGGUaGAaca -5'
23708 3' -57.3 NC_005261.1 + 59070 0.68 0.693846
Target:  5'- gAUGGCCAUGuuGccGUCCGUCUUGa -3'
miRNA:   3'- gUGCCGGUGCgcCuuCGGGUAGAACa -5'
23708 3' -57.3 NC_005261.1 + 41257 0.68 0.693846
Target:  5'- cCGCGGCCACGCucGGAggcgcuggcgccGGCCCGgccggCUggGUc -3'
miRNA:   3'- -GUGCCGGUGCG--CCU------------UCGGGUa----GAa-CA- -5'
23708 3' -57.3 NC_005261.1 + 41179 0.68 0.693846
Target:  5'- cCGCGGCCACGCucGGAggcgcuggcgccGGCCCGgccggCUggGUc -3'
miRNA:   3'- -GUGCCGGUGCG--CCU------------UCGGGUa----GAa-CA- -5'
23708 3' -57.3 NC_005261.1 + 123093 0.68 0.70393
Target:  5'- uCGCGGCCuccggguCGuCGGAgccgGGCCCGUCg--- -3'
miRNA:   3'- -GUGCCGGu------GC-GCCU----UCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 4999 0.68 0.70393
Target:  5'- cCACGGgCGCGCGGcccaaaacaAGGCCCGcUCgcuggUGUc -3'
miRNA:   3'- -GUGCCgGUGCGCC---------UUCGGGU-AGa----ACA- -5'
23708 3' -57.3 NC_005261.1 + 97666 0.68 0.713953
Target:  5'- gGgGGgCGCGUGGGcguAGCCCAUCagcgUGUa -3'
miRNA:   3'- gUgCCgGUGCGCCU---UCGGGUAGa---ACA- -5'
23708 3' -57.3 NC_005261.1 + 103336 0.68 0.713953
Target:  5'- gGCGGCCGCGCGGcGG-CgGUCUc-- -3'
miRNA:   3'- gUGCCGGUGCGCCuUCgGgUAGAaca -5'
23708 3' -57.3 NC_005261.1 + 31247 0.68 0.723906
Target:  5'- cCACGGCCGCGgccaUGGAGGCggccagcgccuCCGUCUcGg -3'
miRNA:   3'- -GUGCCGGUGC----GCCUUCG-----------GGUAGAaCa -5'
23708 3' -57.3 NC_005261.1 + 89222 0.68 0.723906
Target:  5'- gGCGGCCACgGCGGGgugcucggccaGGCCC-UCg--- -3'
miRNA:   3'- gUGCCGGUG-CGCCU-----------UCGGGuAGaaca -5'
23708 3' -57.3 NC_005261.1 + 71260 0.68 0.723906
Target:  5'- gGCGGCCcgacCGCGGc-GCCCGUUUUa- -3'
miRNA:   3'- gUGCCGGu---GCGCCuuCGGGUAGAAca -5'
23708 3' -57.3 NC_005261.1 + 109594 0.68 0.723906
Target:  5'- uCGCGGCCGCgGCGGAGGCagCCGc----- -3'
miRNA:   3'- -GUGCCGGUG-CGCCUUCG--GGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 37784 0.68 0.723906
Target:  5'- aCGCGGCCGCGCaGGugcAGGUCCcgCUc-- -3'
miRNA:   3'- -GUGCCGGUGCG-CC---UUCGGGuaGAaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.