miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23708 3' -57.3 NC_005261.1 + 4999 0.68 0.70393
Target:  5'- cCACGGgCGCGCGGcccaaaacaAGGCCCGcUCgcuggUGUc -3'
miRNA:   3'- -GUGCCgGUGCGCC---------UUCGGGU-AGa----ACA- -5'
23708 3' -57.3 NC_005261.1 + 6215 0.67 0.79989
Target:  5'- gGCaGCgCGgGCGGggGCCCGcauugCUUGg -3'
miRNA:   3'- gUGcCG-GUgCGCCuuCGGGUa----GAACa -5'
23708 3' -57.3 NC_005261.1 + 6463 0.69 0.672512
Target:  5'- -uUGGCgCGCGCGGGAccgcggugcccgcGCCCGUCUa-- -3'
miRNA:   3'- guGCCG-GUGCGCCUU-------------CGGGUAGAaca -5'
23708 3' -57.3 NC_005261.1 + 7800 0.74 0.367691
Target:  5'- gCGCGGCCcCGCGccuGGCCCGUCUUu- -3'
miRNA:   3'- -GUGCCGGuGCGCcu-UCGGGUAGAAca -5'
23708 3' -57.3 NC_005261.1 + 11497 0.67 0.76283
Target:  5'- gCAgGGCCcuCGgGGAAGCCCAgCUcgGUc -3'
miRNA:   3'- -GUgCCGGu-GCgCCUUCGGGUaGAa-CA- -5'
23708 3' -57.3 NC_005261.1 + 12312 0.67 0.790832
Target:  5'- -cCGGCCucgGCGGGcgcGCCCAUCUUc- -3'
miRNA:   3'- guGCCGGug-CGCCUu--CGGGUAGAAca -5'
23708 3' -57.3 NC_005261.1 + 13631 0.7 0.598735
Target:  5'- aGCGGCCGCcuccaggcugaggaGCGGggGCCCuUCc--- -3'
miRNA:   3'- gUGCCGGUG--------------CGCCuuCGGGuAGaaca -5'
23708 3' -57.3 NC_005261.1 + 15154 0.71 0.521257
Target:  5'- aGCGGCCgcccagGCGCGGGccccGCCCAUCgcccgUGa -3'
miRNA:   3'- gUGCCGG------UGCGCCUu---CGGGUAGa----ACa -5'
23708 3' -57.3 NC_005261.1 + 16218 0.75 0.321396
Target:  5'- cCGCGGCCACGauGgcGCCCGUCa--- -3'
miRNA:   3'- -GUGCCGGUGCgcCuuCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 19333 0.67 0.78163
Target:  5'- cCGCGGCCGCGCGuGugcuuucguGGCCCGg----- -3'
miRNA:   3'- -GUGCCGGUGCGC-Cu--------UCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 21873 0.67 0.790832
Target:  5'- cCGCGGCgGCGCG-AGGCCCGc----- -3'
miRNA:   3'- -GUGCCGgUGCGCcUUCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 23380 0.73 0.454417
Target:  5'- -cCGGCCcCGCGGAGGCCuCGUCc--- -3'
miRNA:   3'- guGCCGGuGCGCCUUCGG-GUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 23752 0.68 0.73378
Target:  5'- aCGCGcGCCGCGCGGcAGUCaUAUaCUUGa -3'
miRNA:   3'- -GUGC-CGGUGCGCCuUCGG-GUA-GAACa -5'
23708 3' -57.3 NC_005261.1 + 26215 0.69 0.683711
Target:  5'- -cCGGCCGCGCGcGggGCUCG-CUg-- -3'
miRNA:   3'- guGCCGGUGCGC-CuuCGGGUaGAaca -5'
23708 3' -57.3 NC_005261.1 + 29059 0.7 0.601803
Target:  5'- gCGCGGCCGCGgGGucggcGGCCgCGUCg--- -3'
miRNA:   3'- -GUGCCGGUGCgCCu----UCGG-GUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 31247 0.68 0.723906
Target:  5'- cCACGGCCGCGgccaUGGAGGCggccagcgccuCCGUCUcGg -3'
miRNA:   3'- -GUGCCGGUGC----GCCUUCG-----------GGUAGAaCa -5'
23708 3' -57.3 NC_005261.1 + 33871 0.66 0.81754
Target:  5'- gGCGGCCGCGaCGGcGGCCgccaccaggcgCAgCUUGg -3'
miRNA:   3'- gUGCCGGUGC-GCCuUCGG-----------GUaGAACa -5'
23708 3' -57.3 NC_005261.1 + 34111 0.69 0.672512
Target:  5'- gGCGGCUGCGCGGGccucgcaGGCCCGc----- -3'
miRNA:   3'- gUGCCGGUGCGCCU-------UCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 37289 0.68 0.723906
Target:  5'- gCGCGGCCGCGCGcgccuuGgcGCCC-UCgUGg -3'
miRNA:   3'- -GUGCCGGUGCGC------CuuCGGGuAGaACa -5'
23708 3' -57.3 NC_005261.1 + 37784 0.68 0.723906
Target:  5'- aCGCGGCCGCGCaGGugcAGGUCCcgCUc-- -3'
miRNA:   3'- -GUGCCGGUGCG-CC---UUCGGGuaGAaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.