miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23708 3' -57.3 NC_005261.1 + 38676 0.7 0.6223
Target:  5'- cCACGGUCGCGCGcGuGGCCgCGUCa--- -3'
miRNA:   3'- -GUGCCGGUGCGC-CuUCGG-GUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 39653 0.7 0.581396
Target:  5'- aCGCGGCCGCGCGGGcguuGGCCgCGc----- -3'
miRNA:   3'- -GUGCCGGUGCGCCU----UCGG-GUagaaca -5'
23708 3' -57.3 NC_005261.1 + 40850 0.67 0.753251
Target:  5'- gGCGGCCcCgGCGGugccGGCCCGUCc--- -3'
miRNA:   3'- gUGCCGGuG-CGCCu---UCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 41179 0.68 0.693846
Target:  5'- cCGCGGCCACGCucGGAggcgcuggcgccGGCCCGgccggCUggGUc -3'
miRNA:   3'- -GUGCCGGUGCG--CCU------------UCGGGUa----GAa-CA- -5'
23708 3' -57.3 NC_005261.1 + 41257 0.68 0.693846
Target:  5'- cCGCGGCCACGCucGGAggcgcuggcgccGGCCCGgccggCUggGUc -3'
miRNA:   3'- -GUGCCGGUGCG--CCU------------UCGGGUa----GAa-CA- -5'
23708 3' -57.3 NC_005261.1 + 44866 0.68 0.743564
Target:  5'- -uUGGCCGCGaGGAAGCCCGc----- -3'
miRNA:   3'- guGCCGGUGCgCCUUCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 46078 0.67 0.76283
Target:  5'- aGC-GCCGCGCGGuccgcgcGGCCCAUCc--- -3'
miRNA:   3'- gUGcCGGUGCGCCu------UCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 48162 0.66 0.842725
Target:  5'- gCGCGGCgG-GCGGgcGCgCCGUCggGUa -3'
miRNA:   3'- -GUGCCGgUgCGCCuuCG-GGUAGaaCA- -5'
23708 3' -57.3 NC_005261.1 + 50627 0.68 0.743564
Target:  5'- cCGCGGgcCCugGCGcGAGGgucaCCGUCUUGg -3'
miRNA:   3'- -GUGCC--GGugCGC-CUUCg---GGUAGAACa -5'
23708 3' -57.3 NC_005261.1 + 51907 0.68 0.743564
Target:  5'- aCGCGGCCGgGCcGgcGCCUGUCUg-- -3'
miRNA:   3'- -GUGCCGGUgCGcCuuCGGGUAGAaca -5'
23708 3' -57.3 NC_005261.1 + 52333 0.66 0.826115
Target:  5'- cCACGGCgGCGCGGuacguGGCCUG-CaUGa -3'
miRNA:   3'- -GUGCCGgUGCGCCu----UCGGGUaGaACa -5'
23708 3' -57.3 NC_005261.1 + 52449 0.66 0.834513
Target:  5'- gGCGGCCAgggcgcCGCGGAAGCUgG-CgUGg -3'
miRNA:   3'- gUGCCGGU------GCGCCUUCGGgUaGaACa -5'
23708 3' -57.3 NC_005261.1 + 55094 0.66 0.841912
Target:  5'- gCACGGCUGCGCGGGgucgugcAGCUCGg----- -3'
miRNA:   3'- -GUGCCGGUGCGCCU-------UCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 56480 0.66 0.840281
Target:  5'- aCGCGGCCAgcuccuccuugaggUGCGGGagcaGGCCCAcguUCUc-- -3'
miRNA:   3'- -GUGCCGGU--------------GCGCCU----UCGGGU---AGAaca -5'
23708 3' -57.3 NC_005261.1 + 57194 0.71 0.531132
Target:  5'- gCACGGCCGCGCGGGcgcgAGCCgGa----- -3'
miRNA:   3'- -GUGCCGGUGCGCCU----UCGGgUagaaca -5'
23708 3' -57.3 NC_005261.1 + 57717 0.66 0.81754
Target:  5'- uGCGcGCCGuCGCGGA-GCCCGUa---- -3'
miRNA:   3'- gUGC-CGGU-GCGCCUuCGGGUAgaaca -5'
23708 3' -57.3 NC_005261.1 + 58567 0.66 0.842725
Target:  5'- gCGCGGCgGCGCGGcGGCCag-Cg--- -3'
miRNA:   3'- -GUGCCGgUGCGCCuUCGGguaGaaca -5'
23708 3' -57.3 NC_005261.1 + 59070 0.68 0.693846
Target:  5'- gAUGGCCAUGuuGccGUCCGUCUUGa -3'
miRNA:   3'- gUGCCGGUGCgcCuuCGGGUAGAACa -5'
23708 3' -57.3 NC_005261.1 + 62269 0.66 0.81754
Target:  5'- cCGC-GCCGCGCcGgcGCCCGUCgUGg -3'
miRNA:   3'- -GUGcCGGUGCGcCuuCGGGUAGaACa -5'
23708 3' -57.3 NC_005261.1 + 63070 0.66 0.826115
Target:  5'- -uCGGCgGCGCGcGGAGCCCug--UGa -3'
miRNA:   3'- guGCCGgUGCGC-CUUCGGGuagaACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.