miRNA display CGI


Results 61 - 80 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23708 3' -57.3 NC_005261.1 + 94532 0.67 0.785328
Target:  5'- aCGCGGCCgcgucguccucggcgGCGCGGcugaucAAGCUCAUCg--- -3'
miRNA:   3'- -GUGCCGG---------------UGCGCC------UUCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 95743 0.73 0.436177
Target:  5'- cCGCGGCCGCGCGGAaccAGCCaagCg--- -3'
miRNA:   3'- -GUGCCGGUGCGCCU---UCGGguaGaaca -5'
23708 3' -57.3 NC_005261.1 + 96187 0.7 0.612044
Target:  5'- cCACGgcGCCGCGCGGgcGCCCcgCc--- -3'
miRNA:   3'- -GUGC--CGGUGCGCCuuCGGGuaGaaca -5'
23708 3' -57.3 NC_005261.1 + 97666 0.68 0.713953
Target:  5'- gGgGGgCGCGUGGGcguAGCCCAUCagcgUGUa -3'
miRNA:   3'- gUgCCgGUGCGCCU---UCGGGUAGa---ACA- -5'
23708 3' -57.3 NC_005261.1 + 99832 0.69 0.683711
Target:  5'- gCGCGGCCAUGCGGcggguuGAGCCaAUCc--- -3'
miRNA:   3'- -GUGCCGGUGCGCC------UUCGGgUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 100112 0.66 0.834513
Target:  5'- gGCGGCuggugCACGCGGugcuGGCCCGcCUg-- -3'
miRNA:   3'- gUGCCG-----GUGCGCCu---UCGGGUaGAaca -5'
23708 3' -57.3 NC_005261.1 + 103336 0.68 0.713953
Target:  5'- gGCGGCCGCGCGGcGG-CgGUCUc-- -3'
miRNA:   3'- gUGCCGGUGCGCCuUCgGgUAGAaca -5'
23708 3' -57.3 NC_005261.1 + 103467 0.71 0.561136
Target:  5'- gCGCGGCCACGCGGGgggcGGCCgGc----- -3'
miRNA:   3'- -GUGCCGGUGCGCCU----UCGGgUagaaca -5'
23708 3' -57.3 NC_005261.1 + 104601 0.66 0.808796
Target:  5'- gCugGGCCccGCGCGGGcggcgGGCUUGUCUUu- -3'
miRNA:   3'- -GugCCGG--UGCGCCU-----UCGGGUAGAAca -5'
23708 3' -57.3 NC_005261.1 + 104696 0.67 0.79989
Target:  5'- cCGgGGUCGCGCGG-GGCCCG-CUg-- -3'
miRNA:   3'- -GUgCCGGUGCGCCuUCGGGUaGAaca -5'
23708 3' -57.3 NC_005261.1 + 107685 0.67 0.772293
Target:  5'- --aGGCC-CGCGGGAGCCCcggCg--- -3'
miRNA:   3'- gugCCGGuGCGCCUUCGGGua-Gaaca -5'
23708 3' -57.3 NC_005261.1 + 108179 0.67 0.771353
Target:  5'- gGCGGCCGCGCuGGcggcgcgaaccguGGCCCcgCUg-- -3'
miRNA:   3'- gUGCCGGUGCGcCU-------------UCGGGuaGAaca -5'
23708 3' -57.3 NC_005261.1 + 108581 0.67 0.772293
Target:  5'- -cCGGCgGCGCGGgcGCCCGc----- -3'
miRNA:   3'- guGCCGgUGCGCCuuCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 108988 0.69 0.636669
Target:  5'- gGCGGCCGCGCGcuacgcggcggccgcGggGCCCG-CggccgUGUu -3'
miRNA:   3'- gUGCCGGUGCGC---------------CuuCGGGUaGa----ACA- -5'
23708 3' -57.3 NC_005261.1 + 109557 0.67 0.753251
Target:  5'- gGCGGCCGCgGCuGAGGCggCCGUCgUGg -3'
miRNA:   3'- gUGCCGGUG-CGcCUUCG--GGUAGaACa -5'
23708 3' -57.3 NC_005261.1 + 109594 0.68 0.723906
Target:  5'- uCGCGGCCGCgGCGGAGGCagCCGc----- -3'
miRNA:   3'- -GUGCCGGUG-CGCCUUCG--GGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 115173 0.66 0.808796
Target:  5'- gGCGGCCGCGCGcaaAAGCCgGUg---- -3'
miRNA:   3'- gUGCCGGUGCGCc--UUCGGgUAgaaca -5'
23708 3' -57.3 NC_005261.1 + 117173 0.73 0.409628
Target:  5'- -cCGGCCGCGaCGGcGGGCCCGUCggcUGg -3'
miRNA:   3'- guGCCGGUGC-GCC-UUCGGGUAGa--ACa -5'
23708 3' -57.3 NC_005261.1 + 121654 0.66 0.807912
Target:  5'- gGCGaGCCGCGCGGGcgccgccaugaccAGCCCcagCUcGUc -3'
miRNA:   3'- gUGC-CGGUGCGCCU-------------UCGGGua-GAaCA- -5'
23708 3' -57.3 NC_005261.1 + 123093 0.68 0.70393
Target:  5'- uCGCGGCCuccggguCGuCGGAgccgGGCCCGUCg--- -3'
miRNA:   3'- -GUGCCGGu------GC-GCCU----UCGGGUAGaaca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.