miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23708 3' -57.3 NC_005261.1 + 136912 0.69 0.653081
Target:  5'- gCGCGGCCGCGCaGAAGgCCAc----- -3'
miRNA:   3'- -GUGCCGGUGCGcCUUCgGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 135804 0.7 0.6223
Target:  5'- gGCGGCaCGCgGCGGAAGCCgcCGUCg--- -3'
miRNA:   3'- gUGCCG-GUG-CGCCUUCGG--GUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 126243 0.7 0.601803
Target:  5'- gGCGGCCGCGCaGGccccAAGCCCcgCa--- -3'
miRNA:   3'- gUGCCGGUGCG-CC----UUCGGGuaGaaca -5'
23708 3' -57.3 NC_005261.1 + 125618 0.67 0.790832
Target:  5'- gGCGGUgGCG-GGggGCUCGUCg--- -3'
miRNA:   3'- gUGCCGgUGCgCCuuCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 124758 0.66 0.842725
Target:  5'- gUACGGCugCACGCGGAAGCgCGc----- -3'
miRNA:   3'- -GUGCCG--GUGCGCCUUCGgGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 124027 0.69 0.632563
Target:  5'- cCGCGGCCggggcgGCGCGGuGGCCCGcaUCg--- -3'
miRNA:   3'- -GUGCCGG------UGCGCCuUCGGGU--AGaaca -5'
23708 3' -57.3 NC_005261.1 + 123858 0.67 0.772293
Target:  5'- gGCGGUgGCGCGGccGCCCggCg--- -3'
miRNA:   3'- gUGCCGgUGCGCCuuCGGGuaGaaca -5'
23708 3' -57.3 NC_005261.1 + 123408 0.66 0.834513
Target:  5'- gCGCGGCCGCGCcGGccgcGCCCGgagCgcgGg -3'
miRNA:   3'- -GUGCCGGUGCG-CCuu--CGGGUa--Gaa-Ca -5'
23708 3' -57.3 NC_005261.1 + 123093 0.68 0.70393
Target:  5'- uCGCGGCCuccggguCGuCGGAgccgGGCCCGUCg--- -3'
miRNA:   3'- -GUGCCGGu------GC-GCCU----UCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 121654 0.66 0.807912
Target:  5'- gGCGaGCCGCGCGGGcgccgccaugaccAGCCCcagCUcGUc -3'
miRNA:   3'- gUGC-CGGUGCGCCU-------------UCGGGua-GAaCA- -5'
23708 3' -57.3 NC_005261.1 + 117173 0.73 0.409628
Target:  5'- -cCGGCCGCGaCGGcGGGCCCGUCggcUGg -3'
miRNA:   3'- guGCCGGUGC-GCC-UUCGGGUAGa--ACa -5'
23708 3' -57.3 NC_005261.1 + 115173 0.66 0.808796
Target:  5'- gGCGGCCGCGCGcaaAAGCCgGUg---- -3'
miRNA:   3'- gUGCCGGUGCGCc--UUCGGgUAgaaca -5'
23708 3' -57.3 NC_005261.1 + 109594 0.68 0.723906
Target:  5'- uCGCGGCCGCgGCGGAGGCagCCGc----- -3'
miRNA:   3'- -GUGCCGGUG-CGCCUUCG--GGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 109557 0.67 0.753251
Target:  5'- gGCGGCCGCgGCuGAGGCggCCGUCgUGg -3'
miRNA:   3'- gUGCCGGUG-CGcCUUCG--GGUAGaACa -5'
23708 3' -57.3 NC_005261.1 + 108988 0.69 0.636669
Target:  5'- gGCGGCCGCGCGcuacgcggcggccgcGggGCCCG-CggccgUGUu -3'
miRNA:   3'- gUGCCGGUGCGC---------------CuuCGGGUaGa----ACA- -5'
23708 3' -57.3 NC_005261.1 + 108581 0.67 0.772293
Target:  5'- -cCGGCgGCGCGGgcGCCCGc----- -3'
miRNA:   3'- guGCCGgUGCGCCuuCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 108179 0.67 0.771353
Target:  5'- gGCGGCCGCGCuGGcggcgcgaaccguGGCCCcgCUg-- -3'
miRNA:   3'- gUGCCGGUGCGcCU-------------UCGGGuaGAaca -5'
23708 3' -57.3 NC_005261.1 + 107685 0.67 0.772293
Target:  5'- --aGGCC-CGCGGGAGCCCcggCg--- -3'
miRNA:   3'- gugCCGGuGCGCCUUCGGGua-Gaaca -5'
23708 3' -57.3 NC_005261.1 + 104696 0.67 0.79989
Target:  5'- cCGgGGUCGCGCGG-GGCCCG-CUg-- -3'
miRNA:   3'- -GUgCCGGUGCGCCuUCGGGUaGAaca -5'
23708 3' -57.3 NC_005261.1 + 104601 0.66 0.808796
Target:  5'- gCugGGCCccGCGCGGGcggcgGGCUUGUCUUu- -3'
miRNA:   3'- -GugCCGG--UGCGCCU-----UCGGGUAGAAca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.