miRNA display CGI


Results 21 - 40 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23708 3' -57.3 NC_005261.1 + 103467 0.71 0.561136
Target:  5'- gCGCGGCCACGCGGGgggcGGCCgGc----- -3'
miRNA:   3'- -GUGCCGGUGCGCCU----UCGGgUagaaca -5'
23708 3' -57.3 NC_005261.1 + 103336 0.68 0.713953
Target:  5'- gGCGGCCGCGCGGcGG-CgGUCUc-- -3'
miRNA:   3'- gUGCCGGUGCGCCuUCgGgUAGAaca -5'
23708 3' -57.3 NC_005261.1 + 100112 0.66 0.834513
Target:  5'- gGCGGCuggugCACGCGGugcuGGCCCGcCUg-- -3'
miRNA:   3'- gUGCCG-----GUGCGCCu---UCGGGUaGAaca -5'
23708 3' -57.3 NC_005261.1 + 99832 0.69 0.683711
Target:  5'- gCGCGGCCAUGCGGcggguuGAGCCaAUCc--- -3'
miRNA:   3'- -GUGCCGGUGCGCC------UUCGGgUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 97666 0.68 0.713953
Target:  5'- gGgGGgCGCGUGGGcguAGCCCAUCagcgUGUa -3'
miRNA:   3'- gUgCCgGUGCGCCU---UCGGGUAGa---ACA- -5'
23708 3' -57.3 NC_005261.1 + 96187 0.7 0.612044
Target:  5'- cCACGgcGCCGCGCGGgcGCCCcgCc--- -3'
miRNA:   3'- -GUGC--CGGUGCGCCuuCGGGuaGaaca -5'
23708 3' -57.3 NC_005261.1 + 95743 0.73 0.436177
Target:  5'- cCGCGGCCGCGCGGAaccAGCCaagCg--- -3'
miRNA:   3'- -GUGCCGGUGCGCCU---UCGGguaGaaca -5'
23708 3' -57.3 NC_005261.1 + 94532 0.67 0.785328
Target:  5'- aCGCGGCCgcgucguccucggcgGCGCGGcugaucAAGCUCAUCg--- -3'
miRNA:   3'- -GUGCCGG---------------UGCGCC------UUCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 92164 0.68 0.743564
Target:  5'- --aGGCCGCGUGGAcgAGCgCGUCg--- -3'
miRNA:   3'- gugCCGGUGCGCCU--UCGgGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 91446 0.66 0.826115
Target:  5'- aCGCGGCC-CGCGGGccAGUCCGc----- -3'
miRNA:   3'- -GUGCCGGuGCGCCU--UCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 90704 0.66 0.81754
Target:  5'- gCACGGCCGCccGCGGc-GCCgCGUCg--- -3'
miRNA:   3'- -GUGCCGGUG--CGCCuuCGG-GUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 89222 0.68 0.723906
Target:  5'- gGCGGCCACgGCGGGgugcucggccaGGCCC-UCg--- -3'
miRNA:   3'- gUGCCGGUG-CGCCU-----------UCGGGuAGaaca -5'
23708 3' -57.3 NC_005261.1 + 88915 0.69 0.632563
Target:  5'- gCGCaGGCCGCGCGGAAGCUg------- -3'
miRNA:   3'- -GUG-CCGGUGCGCCUUCGGguagaaca -5'
23708 3' -57.3 NC_005261.1 + 84309 0.66 0.834513
Target:  5'- --aGGCCGCGCGGAccGCCaCGUUg--- -3'
miRNA:   3'- gugCCGGUGCGCCUu-CGG-GUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 83401 0.68 0.73378
Target:  5'- uUACGGCCACGcCGGcGGCCUcgUg--- -3'
miRNA:   3'- -GUGCCGGUGC-GCCuUCGGGuaGaaca -5'
23708 3' -57.3 NC_005261.1 + 83192 0.66 0.808796
Target:  5'- gCACGGCguaGCGCGGAuccggcGGCCCGa----- -3'
miRNA:   3'- -GUGCCGg--UGCGCCU------UCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 80491 0.66 0.834513
Target:  5'- gACGGCCAccgcguCGCGGAagacGGCCCGc----- -3'
miRNA:   3'- gUGCCGGU------GCGCCU----UCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 78039 0.66 0.808796
Target:  5'- cCGCGGCCGCGCGccAGGCagugCUUGg -3'
miRNA:   3'- -GUGCCGGUGCGCc-UUCGgguaGAACa -5'
23708 3' -57.3 NC_005261.1 + 76086 0.72 0.511455
Target:  5'- gCGCGGgCGCGCGGcGGCCCcgCg--- -3'
miRNA:   3'- -GUGCCgGUGCGCCuUCGGGuaGaaca -5'
23708 3' -57.3 NC_005261.1 + 74267 0.69 0.683711
Target:  5'- gCACGuGCCGCGCGGccGCCagcgCGUCcUGg -3'
miRNA:   3'- -GUGC-CGGUGCGCCuuCGG----GUAGaACa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.