Results 61 - 80 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23708 | 3' | -57.3 | NC_005261.1 | + | 48162 | 0.66 | 0.842725 |
Target: 5'- gCGCGGCgG-GCGGgcGCgCCGUCggGUa -3' miRNA: 3'- -GUGCCGgUgCGCCuuCG-GGUAGaaCA- -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 46078 | 0.67 | 0.76283 |
Target: 5'- aGC-GCCGCGCGGuccgcgcGGCCCAUCc--- -3' miRNA: 3'- gUGcCGGUGCGCCu------UCGGGUAGaaca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 44866 | 0.68 | 0.743564 |
Target: 5'- -uUGGCCGCGaGGAAGCCCGc----- -3' miRNA: 3'- guGCCGGUGCgCCUUCGGGUagaaca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 41257 | 0.68 | 0.693846 |
Target: 5'- cCGCGGCCACGCucGGAggcgcuggcgccGGCCCGgccggCUggGUc -3' miRNA: 3'- -GUGCCGGUGCG--CCU------------UCGGGUa----GAa-CA- -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 41179 | 0.68 | 0.693846 |
Target: 5'- cCGCGGCCACGCucGGAggcgcuggcgccGGCCCGgccggCUggGUc -3' miRNA: 3'- -GUGCCGGUGCG--CCU------------UCGGGUa----GAa-CA- -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 40850 | 0.67 | 0.753251 |
Target: 5'- gGCGGCCcCgGCGGugccGGCCCGUCc--- -3' miRNA: 3'- gUGCCGGuG-CGCCu---UCGGGUAGaaca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 39653 | 0.7 | 0.581396 |
Target: 5'- aCGCGGCCGCGCGGGcguuGGCCgCGc----- -3' miRNA: 3'- -GUGCCGGUGCGCCU----UCGG-GUagaaca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 38676 | 0.7 | 0.6223 |
Target: 5'- cCACGGUCGCGCGcGuGGCCgCGUCa--- -3' miRNA: 3'- -GUGCCGGUGCGC-CuUCGG-GUAGaaca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 37784 | 0.68 | 0.723906 |
Target: 5'- aCGCGGCCGCGCaGGugcAGGUCCcgCUc-- -3' miRNA: 3'- -GUGCCGGUGCG-CC---UUCGGGuaGAaca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 37289 | 0.68 | 0.723906 |
Target: 5'- gCGCGGCCGCGCGcgccuuGgcGCCC-UCgUGg -3' miRNA: 3'- -GUGCCGGUGCGC------CuuCGGGuAGaACa -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 34111 | 0.69 | 0.672512 |
Target: 5'- gGCGGCUGCGCGGGccucgcaGGCCCGc----- -3' miRNA: 3'- gUGCCGGUGCGCCU-------UCGGGUagaaca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 33871 | 0.66 | 0.81754 |
Target: 5'- gGCGGCCGCGaCGGcGGCCgccaccaggcgCAgCUUGg -3' miRNA: 3'- gUGCCGGUGC-GCCuUCGG-----------GUaGAACa -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 31247 | 0.68 | 0.723906 |
Target: 5'- cCACGGCCGCGgccaUGGAGGCggccagcgccuCCGUCUcGg -3' miRNA: 3'- -GUGCCGGUGC----GCCUUCG-----------GGUAGAaCa -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 29059 | 0.7 | 0.601803 |
Target: 5'- gCGCGGCCGCGgGGucggcGGCCgCGUCg--- -3' miRNA: 3'- -GUGCCGGUGCgCCu----UCGG-GUAGaaca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 26215 | 0.69 | 0.683711 |
Target: 5'- -cCGGCCGCGCGcGggGCUCG-CUg-- -3' miRNA: 3'- guGCCGGUGCGC-CuuCGGGUaGAaca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 23752 | 0.68 | 0.73378 |
Target: 5'- aCGCGcGCCGCGCGGcAGUCaUAUaCUUGa -3' miRNA: 3'- -GUGC-CGGUGCGCCuUCGG-GUA-GAACa -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 23380 | 0.73 | 0.454417 |
Target: 5'- -cCGGCCcCGCGGAGGCCuCGUCc--- -3' miRNA: 3'- guGCCGGuGCGCCUUCGG-GUAGaaca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 21873 | 0.67 | 0.790832 |
Target: 5'- cCGCGGCgGCGCG-AGGCCCGc----- -3' miRNA: 3'- -GUGCCGgUGCGCcUUCGGGUagaaca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 19333 | 0.67 | 0.78163 |
Target: 5'- cCGCGGCCGCGCGuGugcuuucguGGCCCGg----- -3' miRNA: 3'- -GUGCCGGUGCGC-Cu--------UCGGGUagaaca -5' |
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23708 | 3' | -57.3 | NC_005261.1 | + | 16218 | 0.75 | 0.321396 |
Target: 5'- cCGCGGCCACGauGgcGCCCGUCa--- -3' miRNA: 3'- -GUGCCGGUGCgcCuuCGGGUAGaaca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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