miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23708 3' -57.3 NC_005261.1 + 52449 0.66 0.834513
Target:  5'- gGCGGCCAgggcgcCGCGGAAGCUgG-CgUGg -3'
miRNA:   3'- gUGCCGGU------GCGCCUUCGGgUaGaACa -5'
23708 3' -57.3 NC_005261.1 + 56480 0.66 0.840281
Target:  5'- aCGCGGCCAgcuccuccuugaggUGCGGGagcaGGCCCAcguUCUc-- -3'
miRNA:   3'- -GUGCCGGU--------------GCGCCU----UCGGGU---AGAaca -5'
23708 3' -57.3 NC_005261.1 + 55094 0.66 0.841912
Target:  5'- gCACGGCUGCGCGGGgucgugcAGCUCGg----- -3'
miRNA:   3'- -GUGCCGGUGCGCCU-------UCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 48162 0.66 0.842725
Target:  5'- gCGCGGCgG-GCGGgcGCgCCGUCggGUa -3'
miRNA:   3'- -GUGCCGgUgCGCCuuCG-GGUAGaaCA- -5'
23708 3' -57.3 NC_005261.1 + 124758 0.66 0.842725
Target:  5'- gUACGGCugCACGCGGAAGCgCGc----- -3'
miRNA:   3'- -GUGCCG--GUGCGCCUUCGgGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 57717 0.66 0.81754
Target:  5'- uGCGcGCCGuCGCGGA-GCCCGUa---- -3'
miRNA:   3'- gUGC-CGGU-GCGCCUuCGGGUAgaaca -5'
23708 3' -57.3 NC_005261.1 + 62269 0.66 0.81754
Target:  5'- cCGC-GCCGCGCcGgcGCCCGUCgUGg -3'
miRNA:   3'- -GUGcCGGUGCGcCuuCGGGUAGaACa -5'
23708 3' -57.3 NC_005261.1 + 125618 0.67 0.790832
Target:  5'- gGCGGUgGCG-GGggGCUCGUCg--- -3'
miRNA:   3'- gUGCCGgUGCgCCuuCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 21873 0.67 0.790832
Target:  5'- cCGCGGCgGCGCG-AGGCCCGc----- -3'
miRNA:   3'- -GUGCCGgUGCGCcUUCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 12312 0.67 0.790832
Target:  5'- -cCGGCCucgGCGGGcgcGCCCAUCUUc- -3'
miRNA:   3'- guGCCGGug-CGCCUu--CGGGUAGAAca -5'
23708 3' -57.3 NC_005261.1 + 66613 0.67 0.798991
Target:  5'- cCGCGGCCcgcucgcagcugaGCGCGGcccGGCCCGUg---- -3'
miRNA:   3'- -GUGCCGG-------------UGCGCCu--UCGGGUAgaaca -5'
23708 3' -57.3 NC_005261.1 + 6215 0.67 0.79989
Target:  5'- gGCaGCgCGgGCGGggGCCCGcauugCUUGg -3'
miRNA:   3'- gUGcCG-GUgCGCCuuCGGGUa----GAACa -5'
23708 3' -57.3 NC_005261.1 + 104696 0.67 0.79989
Target:  5'- cCGgGGUCGCGCGG-GGCCCG-CUg-- -3'
miRNA:   3'- -GUgCCGGUGCGCCuUCGGGUaGAaca -5'
23708 3' -57.3 NC_005261.1 + 121654 0.66 0.807912
Target:  5'- gGCGaGCCGCGCGGGcgccgccaugaccAGCCCcagCUcGUc -3'
miRNA:   3'- gUGC-CGGUGCGCCU-------------UCGGGua-GAaCA- -5'
23708 3' -57.3 NC_005261.1 + 83192 0.66 0.808796
Target:  5'- gCACGGCguaGCGCGGAuccggcGGCCCGa----- -3'
miRNA:   3'- -GUGCCGg--UGCGCCU------UCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 115173 0.66 0.808796
Target:  5'- gGCGGCCGCGCGcaaAAGCCgGUg---- -3'
miRNA:   3'- gUGCCGGUGCGCc--UUCGGgUAgaaca -5'
23708 3' -57.3 NC_005261.1 + 104601 0.66 0.808796
Target:  5'- gCugGGCCccGCGCGGGcggcgGGCUUGUCUUu- -3'
miRNA:   3'- -GugCCGG--UGCGCCU-----UCGGGUAGAAca -5'
23708 3' -57.3 NC_005261.1 + 78039 0.66 0.808796
Target:  5'- cCGCGGCCGCGCGccAGGCagugCUUGg -3'
miRNA:   3'- -GUGCCGGUGCGCc-UUCGgguaGAACa -5'
23708 3' -57.3 NC_005261.1 + 64328 0.66 0.808796
Target:  5'- uGCGGCagcuGCGCGacgcGGCCCggCUUGUg -3'
miRNA:   3'- gUGCCGg---UGCGCcu--UCGGGuaGAACA- -5'
23708 3' -57.3 NC_005261.1 + 90704 0.66 0.81754
Target:  5'- gCACGGCCGCccGCGGc-GCCgCGUCg--- -3'
miRNA:   3'- -GUGCCGGUG--CGCCuuCGG-GUAGaaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.