miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23708 3' -57.3 NC_005261.1 + 104601 0.66 0.808796
Target:  5'- gCugGGCCccGCGCGGGcggcgGGCUUGUCUUu- -3'
miRNA:   3'- -GugCCGG--UGCGCCU-----UCGGGUAGAAca -5'
23708 3' -57.3 NC_005261.1 + 115173 0.66 0.808796
Target:  5'- gGCGGCCGCGCGcaaAAGCCgGUg---- -3'
miRNA:   3'- gUGCCGGUGCGCc--UUCGGgUAgaaca -5'
23708 3' -57.3 NC_005261.1 + 71329 0.67 0.78163
Target:  5'- gGCgGGCgCGCGCGGggGCUCGcUCg--- -3'
miRNA:   3'- gUG-CCG-GUGCGCCuuCGGGU-AGaaca -5'
23708 3' -57.3 NC_005261.1 + 108581 0.67 0.772293
Target:  5'- -cCGGCgGCGCGGgcGCCCGc----- -3'
miRNA:   3'- guGCCGgUGCGCCuuCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 107685 0.67 0.772293
Target:  5'- --aGGCC-CGCGGGAGCCCcggCg--- -3'
miRNA:   3'- gugCCGGuGCGCCUUCGGGua-Gaaca -5'
23708 3' -57.3 NC_005261.1 + 123858 0.67 0.772293
Target:  5'- gGCGGUgGCGCGGccGCCCggCg--- -3'
miRNA:   3'- gUGCCGgUGCGCCuuCGGGuaGaaca -5'
23708 3' -57.3 NC_005261.1 + 108179 0.67 0.771353
Target:  5'- gGCGGCCGCGCuGGcggcgcgaaccguGGCCCcgCUg-- -3'
miRNA:   3'- gUGCCGGUGCGcCU-------------UCGGGuaGAaca -5'
23708 3' -57.3 NC_005261.1 + 46078 0.67 0.76283
Target:  5'- aGC-GCCGCGCGGuccgcgcGGCCCAUCc--- -3'
miRNA:   3'- gUGcCGGUGCGCCu------UCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 11497 0.67 0.76283
Target:  5'- gCAgGGCCcuCGgGGAAGCCCAgCUcgGUc -3'
miRNA:   3'- -GUgCCGGu-GCgCCUUCGGGUaGAa-CA- -5'
23708 3' -57.3 NC_005261.1 + 109557 0.67 0.753251
Target:  5'- gGCGGCCGCgGCuGAGGCggCCGUCgUGg -3'
miRNA:   3'- gUGCCGGUG-CGcCUUCG--GGUAGaACa -5'
23708 3' -57.3 NC_005261.1 + 19333 0.67 0.78163
Target:  5'- cCGCGGCCGCGCGuGugcuuucguGGCCCGg----- -3'
miRNA:   3'- -GUGCCGGUGCGC-Cu--------UCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 94532 0.67 0.785328
Target:  5'- aCGCGGCCgcgucguccucggcgGCGCGGcugaucAAGCUCAUCg--- -3'
miRNA:   3'- -GUGCCGG---------------UGCGCC------UUCGGGUAGaaca -5'
23708 3' -57.3 NC_005261.1 + 83192 0.66 0.808796
Target:  5'- gCACGGCguaGCGCGGAuccggcGGCCCGa----- -3'
miRNA:   3'- -GUGCCGg--UGCGCCU------UCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 121654 0.66 0.807912
Target:  5'- gGCGaGCCGCGCGGGcgccgccaugaccAGCCCcagCUcGUc -3'
miRNA:   3'- gUGC-CGGUGCGCCU-------------UCGGGua-GAaCA- -5'
23708 3' -57.3 NC_005261.1 + 104696 0.67 0.79989
Target:  5'- cCGgGGUCGCGCGG-GGCCCG-CUg-- -3'
miRNA:   3'- -GUgCCGGUGCGCCuUCGGGUaGAaca -5'
23708 3' -57.3 NC_005261.1 + 6215 0.67 0.79989
Target:  5'- gGCaGCgCGgGCGGggGCCCGcauugCUUGg -3'
miRNA:   3'- gUGcCG-GUgCGCCuuCGGGUa----GAACa -5'
23708 3' -57.3 NC_005261.1 + 66613 0.67 0.798991
Target:  5'- cCGCGGCCcgcucgcagcugaGCGCGGcccGGCCCGUg---- -3'
miRNA:   3'- -GUGCCGG-------------UGCGCCu--UCGGGUAgaaca -5'
23708 3' -57.3 NC_005261.1 + 12312 0.67 0.790832
Target:  5'- -cCGGCCucgGCGGGcgcGCCCAUCUUc- -3'
miRNA:   3'- guGCCGGug-CGCCUu--CGGGUAGAAca -5'
23708 3' -57.3 NC_005261.1 + 21873 0.67 0.790832
Target:  5'- cCGCGGCgGCGCG-AGGCCCGc----- -3'
miRNA:   3'- -GUGCCGgUGCGCcUUCGGGUagaaca -5'
23708 3' -57.3 NC_005261.1 + 125618 0.67 0.790832
Target:  5'- gGCGGUgGCG-GGggGCUCGUCg--- -3'
miRNA:   3'- gUGCCGgUGCgCCuuCGGGUAGaaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.