miRNA display CGI


Results 1 - 20 of 753 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23708 5' -63.4 NC_005261.1 + 82455 0.66 0.604869
Target:  5'- cCgGCGCGCaGCCGUUuggcuccccggcgccGGGucucccgcgagcGCCGCCGUc -3'
miRNA:   3'- -GgUGUGCGcCGGCGA---------------UCC------------CGGCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 49431 0.66 0.600993
Target:  5'- gCCAgCGCGCGGCUcg-GGGGCUaccuCUGCg -3'
miRNA:   3'- -GGU-GUGCGCCGGcgaUCCCGGc---GGCG- -5'
23708 5' -63.4 NC_005261.1 + 19396 0.66 0.600993
Target:  5'- uCUGCGuCGgGGCCuGCU-GGGCCcgcGCCGa -3'
miRNA:   3'- -GGUGU-GCgCCGG-CGAuCCCGG---CGGCg -5'
23708 5' -63.4 NC_005261.1 + 63233 0.66 0.600993
Target:  5'- gCgACGCGCGGCauggacuacCGCgacGGGCgcaUGUCGCg -3'
miRNA:   3'- -GgUGUGCGCCG---------GCGau-CCCG---GCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 21986 0.66 0.600993
Target:  5'- nCACGCGCacCCGCUuauaggcgucGGGGCCcccgacgugucGCCGUu -3'
miRNA:   3'- gGUGUGCGccGGCGA----------UCCCGG-----------CGGCG- -5'
23708 5' -63.4 NC_005261.1 + 3338 0.66 0.600993
Target:  5'- ----cUGCGGCgGC-AGcGGcCCGCCGCu -3'
miRNA:   3'- gguguGCGCCGgCGaUC-CC-GGCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 135719 0.66 0.600993
Target:  5'- gCCGCGCuggggacccgGCGGCgCGCcGGcuuuuGGCCGgCGCc -3'
miRNA:   3'- -GGUGUG----------CGCCG-GCGaUC-----CCGGCgGCG- -5'
23708 5' -63.4 NC_005261.1 + 114918 0.66 0.600993
Target:  5'- cCCGCG-GCGGCgagUGCgcGGGCcCGCCuggGCa -3'
miRNA:   3'- -GGUGUgCGCCG---GCGauCCCG-GCGG---CG- -5'
23708 5' -63.4 NC_005261.1 + 55510 0.66 0.600993
Target:  5'- gCGCugGCGGUgGCcuc-GCCGCgCGCc -3'
miRNA:   3'- gGUGugCGCCGgCGauccCGGCG-GCG- -5'
23708 5' -63.4 NC_005261.1 + 68941 0.66 0.600024
Target:  5'- gCGCGgacgagcUGCGGCgCGUcgAGGGCCacauCCGCg -3'
miRNA:   3'- gGUGU-------GCGCCG-GCGa-UCCCGGc---GGCG- -5'
23708 5' -63.4 NC_005261.1 + 40498 0.66 0.600024
Target:  5'- cCCGgGCcgGCGGaCCGuCUGGGcGCCGggcguccCCGCu -3'
miRNA:   3'- -GGUgUG--CGCC-GGC-GAUCC-CGGC-------GGCG- -5'
23708 5' -63.4 NC_005261.1 + 134071 0.66 0.599055
Target:  5'- -aGCGCGCGGCCGCcucgcggaucucGGGGCaGUCcCa -3'
miRNA:   3'- ggUGUGCGCCGGCGa-----------UCCCGgCGGcG- -5'
23708 5' -63.4 NC_005261.1 + 79945 0.66 0.597119
Target:  5'- aCGCACGCGuaCGCguacgacucgccGGGCgcguaugaGCCGCa -3'
miRNA:   3'- gGUGUGCGCcgGCGau----------CCCGg-------CGGCG- -5'
23708 5' -63.4 NC_005261.1 + 531 0.66 0.595184
Target:  5'- gCugGCGCcccuggugcucccggGGCCaGC--GGuGCCGCCGCc -3'
miRNA:   3'- gGugUGCG---------------CCGG-CGauCC-CGGCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 138214 0.66 0.595184
Target:  5'- gCugGCGCcccuggugcucccggGGCCaGC--GGuGCCGCCGCc -3'
miRNA:   3'- gGugUGCG---------------CCGG-CGauCC-CGGCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 44003 0.66 0.594216
Target:  5'- gCCA-GCGCGGCgGCggccuccucgacgaAGGGCgcgacguccgcggCGCCGCc -3'
miRNA:   3'- -GGUgUGCGCCGgCGa-------------UCCCG-------------GCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 52127 0.66 0.592282
Target:  5'- gCGCACGCGugccggucGUCGCgcgagcacagcccgcAGGGCaCGUCGCc -3'
miRNA:   3'- gGUGUGCGC--------CGGCGa--------------UCCCG-GCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 1459 0.66 0.591316
Target:  5'- nCGCAUGUGGUgGUacauGGGCCGCguCGUc -3'
miRNA:   3'- gGUGUGCGCCGgCGau--CCCGGCG--GCG- -5'
23708 5' -63.4 NC_005261.1 + 42789 0.66 0.591316
Target:  5'- aCCGCAC-CGGCCgGCUGcuGGaCCG-CGCg -3'
miRNA:   3'- -GGUGUGcGCCGG-CGAUc-CC-GGCgGCG- -5'
23708 5' -63.4 NC_005261.1 + 51018 0.66 0.591316
Target:  5'- cCCAcCGCGCGGCagauGUccucGGCCGUCGUc -3'
miRNA:   3'- -GGU-GUGCGCCGg---CGauc-CCGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.