miRNA display CGI


Results 1 - 20 of 753 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23708 5' -63.4 NC_005261.1 + 176 0.68 0.43503
Target:  5'- -aGgGCGgaCGGCgGCUc-GGCCGCCGCg -3'
miRNA:   3'- ggUgUGC--GCCGgCGAucCCGGCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 418 0.67 0.487826
Target:  5'- gCUGCG-GCGGCgGCUgcGGcGGCgGCUGCg -3'
miRNA:   3'- -GGUGUgCGCCGgCGA--UC-CCGgCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 454 0.67 0.487826
Target:  5'- gCUGCG-GCGGCgGCUgcGGcGGCgGCUGCg -3'
miRNA:   3'- -GGUGUgCGCCGgCGA--UC-CCGgCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 531 0.66 0.595184
Target:  5'- gCugGCGCcccuggugcucccggGGCCaGC--GGuGCCGCCGCc -3'
miRNA:   3'- gGugUGCG---------------CCGG-CGauCC-CGGCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 635 0.67 0.50058
Target:  5'- gCGCGCGCgggggcggggugcggGGCgCGCccccGGGCCccGCCGCc -3'
miRNA:   3'- gGUGUGCG---------------CCG-GCGau--CCCGG--CGGCG- -5'
23708 5' -63.4 NC_005261.1 + 1459 0.66 0.591316
Target:  5'- nCGCAUGUGGUgGUacauGGGCCGCguCGUc -3'
miRNA:   3'- gGUGUGCGCCGgCGau--CCCGGCG--GCG- -5'
23708 5' -63.4 NC_005261.1 + 1488 0.71 0.312093
Target:  5'- aCugGCGUggugugGGCCGCgc-GGCCGCgGCg -3'
miRNA:   3'- gGugUGCG------CCGGCGaucCCGGCGgCG- -5'
23708 5' -63.4 NC_005261.1 + 1773 0.68 0.43503
Target:  5'- gCGCGCGCGcGCCG--AGGGCgGCgGg -3'
miRNA:   3'- gGUGUGCGC-CGGCgaUCCCGgCGgCg -5'
23708 5' -63.4 NC_005261.1 + 1952 0.69 0.409899
Target:  5'- cCCuCGCGgGcGUCGCaGGGGCaCGCgGCa -3'
miRNA:   3'- -GGuGUGCgC-CGGCGaUCCCG-GCGgCG- -5'
23708 5' -63.4 NC_005261.1 + 2615 0.68 0.476121
Target:  5'- gCGCagaGCGCGuGCCGCUGucggaggugaccguGGGCgacgCGCCGUu -3'
miRNA:   3'- gGUG---UGCGC-CGGCGAU--------------CCCG----GCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 2730 0.7 0.377836
Target:  5'- gCGCGgGCGGCCcucGCUcgAGGaGCucugCGCCGCg -3'
miRNA:   3'- gGUGUgCGCCGG---CGA--UCC-CG----GCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 2955 0.68 0.43503
Target:  5'- cUCGCACGCcgcccaGGCgGCgcGGGC-GCUGCg -3'
miRNA:   3'- -GGUGUGCG------CCGgCGauCCCGgCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 3045 0.75 0.167463
Target:  5'- cCCGgA-GCGGuUCGCccccgAGGGCCGCCGCg -3'
miRNA:   3'- -GGUgUgCGCC-GGCGa----UCCCGGCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 3091 0.7 0.340196
Target:  5'- uCCGCGCgaccgGCGuGUCGCccuGGGCgGCCGUg -3'
miRNA:   3'- -GGUGUG-----CGC-CGGCGau-CCCGgCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 3261 0.68 0.469876
Target:  5'- uCCGCAgCGCGGCg---GGGGagacgaCGCCGCc -3'
miRNA:   3'- -GGUGU-GCGCCGgcgaUCCCg-----GCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 3338 0.66 0.600993
Target:  5'- ----cUGCGGCgGC-AGcGGcCCGCCGCu -3'
miRNA:   3'- gguguGCGCCGgCGaUC-CC-GGCGGCG- -5'
23708 5' -63.4 NC_005261.1 + 3370 0.82 0.061698
Target:  5'- cCCGCACGCGGCCGCggcggcGaGGCCGaCGCc -3'
miRNA:   3'- -GGUGUGCGCCGGCGau----C-CCGGCgGCG- -5'
23708 5' -63.4 NC_005261.1 + 3406 0.67 0.515334
Target:  5'- -aGgACGgGGCCGCcGGGGCgccccuggCGCgGCg -3'
miRNA:   3'- ggUgUGCgCCGGCGaUCCCG--------GCGgCG- -5'
23708 5' -63.4 NC_005261.1 + 3820 0.68 0.469876
Target:  5'- gCGC-CGCGGCUGCgcAGGGCgGgCCugGCg -3'
miRNA:   3'- gGUGuGCGCCGGCGa-UCCCGgC-GG--CG- -5'
23708 5' -63.4 NC_005261.1 + 4038 0.77 0.128069
Target:  5'- cCCcCGCGCcGCCGCgcggGGGGCggCGCCGCu -3'
miRNA:   3'- -GGuGUGCGcCGGCGa---UCCCG--GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.