miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 5560 0.66 0.460811
Target:  5'- gGGCGCCcgaGCGGCggagauggGGGCgccgagggcgcccgCCUCgaGGCc -3'
miRNA:   3'- -CCGCGG---CGCCGg-------CCCGa-------------GGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 17738 0.66 0.457351
Target:  5'- cGGCGCU-CGGagCGGGCggaCUUCUGGg -3'
miRNA:   3'- -CCGCGGcGCCg-GCCCGag-GAGGACCg -5'
23709 3' -66.4 NC_005261.1 + 55164 0.66 0.457351
Target:  5'- aGCGCCGCcGCCGGcgGCUCg-CggGGCg -3'
miRNA:   3'- cCGCGGCGcCGGCC--CGAGgaGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 71971 0.66 0.457351
Target:  5'- gGGCGCggagcgCGCGGCaGGuGCgcagcgucgCC-CCUGGCc -3'
miRNA:   3'- -CCGCG------GCGCCGgCC-CGa--------GGaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 73225 0.66 0.457351
Target:  5'- gGGCGCgGUGGCCGcGaGCgcgagcaggUCCUCC--GCg -3'
miRNA:   3'- -CCGCGgCGCCGGC-C-CG---------AGGAGGacCG- -5'
23709 3' -66.4 NC_005261.1 + 101519 0.66 0.457351
Target:  5'- cGGCGCCcucgucGCGGUCGcGCgCCgCCUcGGCc -3'
miRNA:   3'- -CCGCGG------CGCCGGCcCGaGGaGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 124022 0.66 0.457351
Target:  5'- -uUGCCGUGuaGCCGGGCgCCUCUgagUGcGCu -3'
miRNA:   3'- ccGCGGCGC--CGGCCCGaGGAGG---AC-CG- -5'
23709 3' -66.4 NC_005261.1 + 3860 0.66 0.457351
Target:  5'- cGGCGCCgcGCGGCCGGcgagcacggcgcGCagCUC--GGCg -3'
miRNA:   3'- -CCGCGG--CGCCGGCC------------CGagGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 46243 0.66 0.457351
Target:  5'- cGCGUCGCaGGCCGcGGCggcggCCgcgaccgugUCCccggGGCg -3'
miRNA:   3'- cCGCGGCG-CCGGC-CCGa----GG---------AGGa---CCG- -5'
23709 3' -66.4 NC_005261.1 + 58794 0.66 0.457351
Target:  5'- aGCGCgCGCaggaaGGCCGGcacGCgccgcgccacgUCCUCCaGGCa -3'
miRNA:   3'- cCGCG-GCG-----CCGGCC---CG-----------AGGAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 105189 0.66 0.457351
Target:  5'- cGcCGCCGCGGCa-GGCUCgUCCg--- -3'
miRNA:   3'- cC-GCGGCGCCGgcCCGAGgAGGaccg -5'
23709 3' -66.4 NC_005261.1 + 106218 0.66 0.453905
Target:  5'- aGCGcCCGCGGCCGccuGGCgcggccgccgcgcCCUaCCgGGCc -3'
miRNA:   3'- cCGC-GGCGCCGGC---CCGa------------GGA-GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 79611 0.66 0.452187
Target:  5'- gGGCGCagggcuccacgagcuCGCGGCCcGGCagcagcucguugUCCUCgccgagCUGGCc -3'
miRNA:   3'- -CCGCG---------------GCGCCGGcCCG------------AGGAG------GACCG- -5'
23709 3' -66.4 NC_005261.1 + 29091 0.66 0.449617
Target:  5'- gGGgGCCGgGGaCuCGGGgaCCgacgccgaggggagcCCUGGCg -3'
miRNA:   3'- -CCgCGGCgCC-G-GCCCgaGGa--------------GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 110827 0.66 0.448762
Target:  5'- cGGgGCCGCGGaCGaGuuUCCgcugcccgcCCUGGCg -3'
miRNA:   3'- -CCgCGGCGCCgGC-CcgAGGa--------GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 109005 0.66 0.448762
Target:  5'- cGCGCUGCGcguucaCCGGGCcgaacgCCgCCgUGGCg -3'
miRNA:   3'- cCGCGGCGCc-----GGCCCGa-----GGaGG-ACCG- -5'
23709 3' -66.4 NC_005261.1 + 107718 0.66 0.448762
Target:  5'- cGCuGCCGCGGCagGcGGCUgCgCCUcGGCc -3'
miRNA:   3'- cCG-CGGCGCCGg-C-CCGAgGaGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 102728 0.66 0.448762
Target:  5'- cGCGcCCGCcGCCaGGGCgUUCUUCagGGCg -3'
miRNA:   3'- cCGC-GGCGcCGG-CCCG-AGGAGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 52965 0.66 0.448762
Target:  5'- aGCGCCGC-GCCGGuGCggcgCCggCaGGCg -3'
miRNA:   3'- cCGCGGCGcCGGCC-CGa---GGagGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 5976 0.66 0.448762
Target:  5'- cGGCuccucuGCCGCGcGUCuccGCUCCUCCcgcGGCg -3'
miRNA:   3'- -CCG------CGGCGC-CGGcc-CGAGGAGGa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.