Results 61 - 80 of 377 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23709 | 3' | -66.4 | NC_005261.1 | + | 102728 | 0.66 | 0.448762 |
Target: 5'- cGCGcCCGCcGCCaGGGCgUUCUUCagGGCg -3' miRNA: 3'- cCGC-GGCGcCGG-CCCG-AGGAGGa-CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 52965 | 0.66 | 0.448762 |
Target: 5'- aGCGCCGC-GCCGGuGCggcgCCggCaGGCg -3' miRNA: 3'- cCGCGGCGcCGGCC-CGa---GGagGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 5976 | 0.66 | 0.448762 |
Target: 5'- cGGCuccucuGCCGCGcGUCuccGCUCCUCCcgcGGCg -3' miRNA: 3'- -CCG------CGGCGC-CGGcc-CGAGGAGGa--CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 111244 | 0.66 | 0.448762 |
Target: 5'- ---cCCGCGGCCGGGCccaggCCaCCUGccGCu -3' miRNA: 3'- ccgcGGCGCCGGCCCGa----GGaGGAC--CG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 98669 | 0.66 | 0.448762 |
Target: 5'- aGGCGa---GGgCGGGCUCCgCCggGGCc -3' miRNA: 3'- -CCGCggcgCCgGCCCGAGGaGGa-CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 90388 | 0.66 | 0.448762 |
Target: 5'- aGGCcCCGcCGGCgGGGCUggcgCCcGGCg -3' miRNA: 3'- -CCGcGGC-GCCGgCCCGAgga-GGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 23954 | 0.67 | 0.40721 |
Target: 5'- cGGgGUCGuCGGCaCGcGGUUCCugcuuUCCgGGCg -3' miRNA: 3'- -CCgCGGC-GCCG-GC-CCGAGG-----AGGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 321 | 0.67 | 0.40721 |
Target: 5'- cGGCgGCUGCGGCgGcGGCUgcggcggcCCgcagCCcGGCg -3' miRNA: 3'- -CCG-CGGCGCCGgC-CCGA--------GGa---GGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 36951 | 0.67 | 0.406403 |
Target: 5'- uGGCGCaaggcccgccgCGCGGCgcagagcucggugCGGGCUCCagCCggagcccgcgGGCu -3' miRNA: 3'- -CCGCG-----------GCGCCG-------------GCCCGAGGa-GGa---------CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 70333 | 0.67 | 0.406403 |
Target: 5'- aGGCGCaCGCgucgagcgGGCCGgggaccgggaggcGGCgcgCCUCCacGGCg -3' miRNA: 3'- -CCGCG-GCG--------CCGGC-------------CCGa--GGAGGa-CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 85376 | 0.67 | 0.399193 |
Target: 5'- cGCGCCGCcGCCcucGGGCUUCUgguaGGCg -3' miRNA: 3'- cCGCGGCGcCGG---CCCGAGGAgga-CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 75207 | 0.67 | 0.399193 |
Target: 5'- uGGCgGCCGCGGUggCGGcGCUgCagUCCagcgGGCg -3' miRNA: 3'- -CCG-CGGCGCCG--GCC-CGAgG--AGGa---CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 34922 | 0.67 | 0.40721 |
Target: 5'- gGGCGCgGCcacgcggggggcGGCCGGcGCgacCCgggCCcGGCg -3' miRNA: 3'- -CCGCGgCG------------CCGGCC-CGa--GGa--GGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 120241 | 0.67 | 0.40721 |
Target: 5'- aGCGCCGCuucGCCGcGGCUgCCacgCC-GGCc -3' miRNA: 3'- cCGCGGCGc--CGGC-CCGA-GGa--GGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 137992 | 0.67 | 0.40721 |
Target: 5'- cGGCgGCUGCGGCgGcGGCUgcggcggcCCgcagCCcGGCg -3' miRNA: 3'- -CCG-CGGCGCCGgC-CCGA--------GGa---GGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 10674 | 0.67 | 0.40721 |
Target: 5'- gGGUGCUGCcGCCGucC-CCUCCcGGCa -3' miRNA: 3'- -CCGCGGCGcCGGCccGaGGAGGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 85577 | 0.67 | 0.40721 |
Target: 5'- cGGCGCCGCGaCCGcGGC--CUCCgcgaGCg -3' miRNA: 3'- -CCGCGGCGCcGGC-CCGagGAGGac--CG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 115384 | 0.67 | 0.40721 |
Target: 5'- cGGCGUCGUGGUcuucagCGGGUcgUCgaCCgcgGGCg -3' miRNA: 3'- -CCGCGGCGCCG------GCCCG--AGgaGGa--CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 118864 | 0.67 | 0.40721 |
Target: 5'- cGCGcCCGCGGCCcuGGCcucggCCaCCgcgGGCg -3' miRNA: 3'- cCGC-GGCGCCGGc-CCGa----GGaGGa--CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 71150 | 0.67 | 0.399193 |
Target: 5'- aGCGCCGCcccGGCa-GGCUCUgggaugaacgcgUCCgGGCg -3' miRNA: 3'- cCGCGGCG---CCGgcCCGAGG------------AGGaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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