miRNA display CGI


Results 81 - 100 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 2791 0.67 0.391277
Target:  5'- gGGCuGCCgccgGCGGCCGGGaggggCCgGGCg -3'
miRNA:   3'- -CCG-CGG----CGCCGGCCCgaggaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 134216 0.67 0.391277
Target:  5'- gGGuCGCgGCGGCCGGcaGCgUCggCgUGGCg -3'
miRNA:   3'- -CC-GCGgCGCCGGCC--CG-AGgaGgACCG- -5'
23709 3' -66.4 NC_005261.1 + 110463 0.67 0.399193
Target:  5'- gGGUGCC-UGGgCGGGCUgCUCUcgUGGa -3'
miRNA:   3'- -CCGCGGcGCCgGCCCGAgGAGG--ACCg -5'
23709 3' -66.4 NC_005261.1 + 29687 0.67 0.399193
Target:  5'- gGGCGCUGCcGCaCGuGGCggCCUgCgUGGCc -3'
miRNA:   3'- -CCGCGGCGcCG-GC-CCGa-GGA-GgACCG- -5'
23709 3' -66.4 NC_005261.1 + 45625 0.67 0.399193
Target:  5'- cGGCGCgGCGcGgCGGGC-CCgcgCCgGaGCa -3'
miRNA:   3'- -CCGCGgCGC-CgGCCCGaGGa--GGaC-CG- -5'
23709 3' -66.4 NC_005261.1 + 118864 0.67 0.40721
Target:  5'- cGCGcCCGCGGCCcuGGCcucggCCaCCgcgGGCg -3'
miRNA:   3'- cCGC-GGCGCCGGc-CCGa----GGaGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 115384 0.67 0.40721
Target:  5'- cGGCGUCGUGGUcuucagCGGGUcgUCgaCCgcgGGCg -3'
miRNA:   3'- -CCGCGGCGCCG------GCCCG--AGgaGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 85577 0.67 0.40721
Target:  5'- cGGCGCCGCGaCCGcGGC--CUCCgcgaGCg -3'
miRNA:   3'- -CCGCGGCGCcGGC-CCGagGAGGac--CG- -5'
23709 3' -66.4 NC_005261.1 + 10674 0.67 0.40721
Target:  5'- gGGUGCUGCcGCCGucC-CCUCCcGGCa -3'
miRNA:   3'- -CCGCGGCGcCGGCccGaGGAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 137992 0.67 0.40721
Target:  5'- cGGCgGCUGCGGCgGcGGCUgcggcggcCCgcagCCcGGCg -3'
miRNA:   3'- -CCG-CGGCGCCGgC-CCGA--------GGa---GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 120241 0.67 0.40721
Target:  5'- aGCGCCGCuucGCCGcGGCUgCCacgCC-GGCc -3'
miRNA:   3'- cCGCGGCGc--CGGC-CCGA-GGa--GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 34922 0.67 0.40721
Target:  5'- gGGCGCgGCcacgcggggggcGGCCGGcGCgacCCgggCCcGGCg -3'
miRNA:   3'- -CCGCGgCG------------CCGGCC-CGa--GGa--GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 23954 0.67 0.40721
Target:  5'- cGGgGUCGuCGGCaCGcGGUUCCugcuuUCCgGGCg -3'
miRNA:   3'- -CCgCGGC-GCCG-GC-CCGAGG-----AGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 321 0.67 0.40721
Target:  5'- cGGCgGCUGCGGCgGcGGCUgcggcggcCCgcagCCcGGCg -3'
miRNA:   3'- -CCG-CGGCGCCGgC-CCGA--------GGa---GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 36951 0.67 0.406403
Target:  5'- uGGCGCaaggcccgccgCGCGGCgcagagcucggugCGGGCUCCagCCggagcccgcgGGCu -3'
miRNA:   3'- -CCGCG-----------GCGCCG-------------GCCCGAGGa-GGa---------CCG- -5'
23709 3' -66.4 NC_005261.1 + 70333 0.67 0.406403
Target:  5'- aGGCGCaCGCgucgagcgGGCCGgggaccgggaggcGGCgcgCCUCCacGGCg -3'
miRNA:   3'- -CCGCG-GCG--------CCGGC-------------CCGa--GGAGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 85376 0.67 0.399193
Target:  5'- cGCGCCGCcGCCcucGGGCUUCUgguaGGCg -3'
miRNA:   3'- cCGCGGCGcCGG---CCCGAGGAgga-CCG- -5'
23709 3' -66.4 NC_005261.1 + 75207 0.67 0.399193
Target:  5'- uGGCgGCCGCGGUggCGGcGCUgCagUCCagcgGGCg -3'
miRNA:   3'- -CCG-CGGCGCCG--GCC-CGAgG--AGGa---CCG- -5'
23709 3' -66.4 NC_005261.1 + 71150 0.67 0.399193
Target:  5'- aGCGCCGCcccGGCa-GGCUCUgggaugaacgcgUCCgGGCg -3'
miRNA:   3'- cCGCGGCG---CCGgcCCGAGG------------AGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 58472 0.67 0.399193
Target:  5'- gGGCgcguaugaGCCGCaGGCCGGcGCgcggCCgcUUUUGGCg -3'
miRNA:   3'- -CCG--------CGGCG-CCGGCC-CGa---GG--AGGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.