Results 101 - 120 of 377 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23709 | 3' | -66.4 | NC_005261.1 | + | 120241 | 0.67 | 0.40721 |
Target: 5'- aGCGCCGCuucGCCGcGGCUgCCacgCC-GGCc -3' miRNA: 3'- cCGCGGCGc--CGGC-CCGA-GGa--GGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 137992 | 0.67 | 0.40721 |
Target: 5'- cGGCgGCUGCGGCgGcGGCUgcggcggcCCgcagCCcGGCg -3' miRNA: 3'- -CCG-CGGCGCCGgC-CCGA--------GGa---GGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 10674 | 0.67 | 0.40721 |
Target: 5'- gGGUGCUGCcGCCGucC-CCUCCcGGCa -3' miRNA: 3'- -CCGCGGCGcCGGCccGaGGAGGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 85577 | 0.67 | 0.40721 |
Target: 5'- cGGCGCCGCGaCCGcGGC--CUCCgcgaGCg -3' miRNA: 3'- -CCGCGGCGCcGGC-CCGagGAGGac--CG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 115384 | 0.67 | 0.40721 |
Target: 5'- cGGCGUCGUGGUcuucagCGGGUcgUCgaCCgcgGGCg -3' miRNA: 3'- -CCGCGGCGCCG------GCCCG--AGgaGGa--CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 118864 | 0.67 | 0.40721 |
Target: 5'- cGCGcCCGCGGCCcuGGCcucggCCaCCgcgGGCg -3' miRNA: 3'- cCGC-GGCGCCGGc-CCGa----GGaGGa--CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 85376 | 0.67 | 0.399193 |
Target: 5'- cGCGCCGCcGCCcucGGGCUUCUgguaGGCg -3' miRNA: 3'- cCGCGGCGcCGG---CCCGAGGAgga-CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 75207 | 0.67 | 0.399193 |
Target: 5'- uGGCgGCCGCGGUggCGGcGCUgCagUCCagcgGGCg -3' miRNA: 3'- -CCG-CGGCGCCG--GCC-CGAgG--AGGa---CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 71150 | 0.67 | 0.399193 |
Target: 5'- aGCGCCGCcccGGCa-GGCUCUgggaugaacgcgUCCgGGCg -3' miRNA: 3'- cCGCGGCG---CCGgcCCGAGG------------AGGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 98550 | 0.67 | 0.391277 |
Target: 5'- uGCGcCCGCGaaauccGgCGGGCggccgUCCUCCgcgGGCu -3' miRNA: 3'- cCGC-GGCGC------CgGCCCG-----AGGAGGa--CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 91204 | 0.67 | 0.394431 |
Target: 5'- cGGCGCCGUgcuGGCCGaGGCccacgccaagaucgCCgaCCcGGCg -3' miRNA: 3'- -CCGCGGCG---CCGGC-CCGa-------------GGa-GGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 113139 | 0.67 | 0.396807 |
Target: 5'- cGCGCgGCGGCUGaacguGGagaucgccgagcgcCUgCUCCUGGCc -3' miRNA: 3'- cCGCGgCGCCGGC-----CC--------------GAgGAGGACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 20928 | 0.67 | 0.399193 |
Target: 5'- --aGCUGCuGGCCaGcGGCaUCCUCCUccGGCu -3' miRNA: 3'- ccgCGGCG-CCGG-C-CCG-AGGAGGA--CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 29962 | 0.67 | 0.399193 |
Target: 5'- aGGCGCUagagGCGGCgCGGuGCgCCgCC-GGCg -3' miRNA: 3'- -CCGCGG----CGCCG-GCC-CGaGGaGGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 43450 | 0.67 | 0.399193 |
Target: 5'- cGGCGCCuggacGUcGCCGGGCgggUgCUGGCg -3' miRNA: 3'- -CCGCGG-----CGcCGGCCCGaggAgGACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 110463 | 0.67 | 0.399193 |
Target: 5'- gGGUGCC-UGGgCGGGCUgCUCUcgUGGa -3' miRNA: 3'- -CCGCGGcGCCgGCCCGAgGAGG--ACCg -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 29687 | 0.67 | 0.399193 |
Target: 5'- gGGCGCUGCcGCaCGuGGCggCCUgCgUGGCc -3' miRNA: 3'- -CCGCGGCGcCG-GC-CCGa-GGA-GgACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 45625 | 0.67 | 0.399193 |
Target: 5'- cGGCGCgGCGcGgCGGGC-CCgcgCCgGaGCa -3' miRNA: 3'- -CCGCGgCGC-CgGCCCGaGGa--GGaC-CG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 58472 | 0.67 | 0.399193 |
Target: 5'- gGGCgcguaugaGCCGCaGGCCGGcGCgcggCCgcUUUUGGCg -3' miRNA: 3'- -CCG--------CGGCG-CCGGCC-CGa---GG--AGGACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 130419 | 0.67 | 0.398396 |
Target: 5'- cGGCcaggaggagcccgGCCGCGGCgccuaCGuGGuCUCCUacgaCUGGCc -3' miRNA: 3'- -CCG-------------CGGCGCCG-----GC-CC-GAGGAg---GACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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