Results 1 - 20 of 377 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23709 | 3' | -66.4 | NC_005261.1 | + | 2942 | 0.84 | 0.026549 |
Target: 5'- -cCGCCGCGGCCGGGCUCCggcCCggacuagGGCc -3' miRNA: 3'- ccGCGGCGCCGGCCCGAGGa--GGa------CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 40693 | 0.84 | 0.026618 |
Target: 5'- cGGCGCC--GGCCGGGCUCCUCCgaaagcagcgaggggGGCg -3' miRNA: 3'- -CCGCGGcgCCGGCCCGAGGAGGa--------------CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 4529 | 0.84 | 0.02458 |
Target: 5'- gGGCGCCGCGGCgaGGGCgCCgggcCCUGGCc -3' miRNA: 3'- -CCGCGGCGCCGg-CCCGaGGa---GGACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 130858 | 0.83 | 0.030966 |
Target: 5'- cGCGCC-CGGCCGGGCgCCgcggCCUGGCc -3' miRNA: 3'- cCGCGGcGCCGGCCCGaGGa---GGACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 134569 | 0.82 | 0.036105 |
Target: 5'- cGGCGCCGCGGCUgcgcaGGGCggg-CCUGGCg -3' miRNA: 3'- -CCGCGGCGCCGG-----CCCGaggaGGACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 70661 | 0.82 | 0.032594 |
Target: 5'- cGGCGCCGCGGCCgcGGGCcgcaCCUCCagccaGGCg -3' miRNA: 3'- -CCGCGGCGCCGG--CCCGa---GGAGGa----CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 1179 | 0.82 | 0.037039 |
Target: 5'- cGCGCCGCGGCCGGGg-CCggggCCgGGCg -3' miRNA: 3'- cCGCGGCGCCGGCCCgaGGa---GGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 31923 | 0.8 | 0.047782 |
Target: 5'- gGGCGCCGCcGCUGGGCUCUgCCgcGGCg -3' miRNA: 3'- -CCGCGGCGcCGGCCCGAGGaGGa-CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 115446 | 0.8 | 0.05027 |
Target: 5'- cGCGCuCGCGGCCGGaCUCCUCCgccucGGUg -3' miRNA: 3'- cCGCG-GCGCCGGCCcGAGGAGGa----CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 47700 | 0.8 | 0.05027 |
Target: 5'- cGGCGCCGCGucggcggcGUCGGGggCCUCCUcGGCg -3' miRNA: 3'- -CCGCGGCGC--------CGGCCCgaGGAGGA-CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 106582 | 0.8 | 0.047782 |
Target: 5'- cGGgGCCGCcGCgCGGcGCUCCUCCUGGa -3' miRNA: 3'- -CCgCGGCGcCG-GCC-CGAGGAGGACCg -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 33749 | 0.8 | 0.052884 |
Target: 5'- cGGCGCCGgGGCCGGGCcCgCUCgCggGGCc -3' miRNA: 3'- -CCGCGGCgCCGGCCCGaG-GAG-Ga-CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 50802 | 0.8 | 0.047782 |
Target: 5'- cGGCGCCGCcGCCaugacGGGCUCCgcgcggCUUGGCg -3' miRNA: 3'- -CCGCGGCGcCGG-----CCCGAGGa-----GGACCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 43794 | 0.79 | 0.061541 |
Target: 5'- gGGCGCCGCGggugagggggcGCCGGGCgcgcCCUCCgUGGa -3' miRNA: 3'- -CCGCGGCGC-----------CGGCCCGa---GGAGG-ACCg -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 28755 | 0.78 | 0.075238 |
Target: 5'- aGGaCGCCGCGGCCGGGggCg-CCUGGg -3' miRNA: 3'- -CC-GCGGCGCCGGCCCgaGgaGGACCg -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 121188 | 0.78 | 0.066369 |
Target: 5'- cGGgGCCGgGGCCGGGC-CCggggCCgcgGGCc -3' miRNA: 3'- -CCgCGGCgCCGGCCCGaGGa---GGa--CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 121079 | 0.78 | 0.075238 |
Target: 5'- cGGCGCCgGCGGCCGccaGCgCCUCCaGGCc -3' miRNA: 3'- -CCGCGG-CGCCGGCc--CGaGGAGGaCCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 16261 | 0.77 | 0.081093 |
Target: 5'- gGGcCGCCGgGGCCGGGCUUCggcucgcCCgggggGGCg -3' miRNA: 3'- -CC-GCGGCgCCGGCCCGAGGa------GGa----CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 91127 | 0.77 | 0.079094 |
Target: 5'- cGCGCCGCGGCCGaGGCcucagCCgugCCgcccGGCg -3' miRNA: 3'- cCGCGGCGCCGGC-CCGa----GGa--GGa---CCG- -5' |
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23709 | 3' | -66.4 | NC_005261.1 | + | 5161 | 0.77 | 0.077143 |
Target: 5'- cGGCggGCCGCgucgagcagGGCCGGGUccUCCUCCgGGCc -3' miRNA: 3'- -CCG--CGGCG---------CCGGCCCG--AGGAGGaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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