miRNA display CGI


Results 41 - 60 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 118922 0.75 0.114628
Target:  5'- cGGCGCCGCGGgCGcGGCgCCgcgcggCUGGCc -3'
miRNA:   3'- -CCGCGGCGCCgGC-CCGaGGag----GACCG- -5'
23709 3' -66.4 NC_005261.1 + 102315 0.74 0.126376
Target:  5'- cGCGCCGCGGCCGcGGCgcgcagCCgcgCCagcucGGCc -3'
miRNA:   3'- cCGCGGCGCCGGC-CCGa-----GGa--GGa----CCG- -5'
23709 3' -66.4 NC_005261.1 + 3910 0.74 0.142627
Target:  5'- gGGCGcCCGCGccGCCGGcGCcggCCUCCgGGUa -3'
miRNA:   3'- -CCGC-GGCGC--CGGCC-CGa--GGAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 93919 0.74 0.123339
Target:  5'- cGGCGcCCGCGGgCuugcgccguccgCGGGCgccgCCUCCgGGCg -3'
miRNA:   3'- -CCGC-GGCGCC-G------------GCCCGa---GGAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 118325 0.74 0.123339
Target:  5'- cGCGCUGCuGGCCaugaccugcGGGCUgCUCCUcGGCc -3'
miRNA:   3'- cCGCGGCG-CCGG---------CCCGAgGAGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 81371 0.74 0.134927
Target:  5'- gGGCGCCGgGcucgcugggggcGCCGGGCUCCcggCCUccccagcucccccaGGCa -3'
miRNA:   3'- -CCGCGGCgC------------CGGCCCGAGGa--GGA--------------CCG- -5'
23709 3' -66.4 NC_005261.1 + 51320 0.74 0.13266
Target:  5'- cGGCGCCGCcGCCgccuucgucGGGCUCUUCUgcaccgcugGGCu -3'
miRNA:   3'- -CCGCGGCGcCGG---------CCCGAGGAGGa--------CCG- -5'
23709 3' -66.4 NC_005261.1 + 117676 0.74 0.135909
Target:  5'- cGCGCC-CGGCCGGGC-CCgcggCgaGGCc -3'
miRNA:   3'- cCGCGGcGCCGGCCCGaGGa---GgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 121809 0.74 0.126376
Target:  5'- gGGCG-CGUGGCUGGGCUCUgcgggCCgccgcGGCg -3'
miRNA:   3'- -CCGCgGCGCCGGCCCGAGGa----GGa----CCG- -5'
23709 3' -66.4 NC_005261.1 + 124439 0.74 0.126376
Target:  5'- cGCGCCGCcacaccagccggGGCCGGGUgcCCUCaggGGCg -3'
miRNA:   3'- cCGCGGCG------------CCGGCCCGa-GGAGga-CCG- -5'
23709 3' -66.4 NC_005261.1 + 127804 0.73 0.168591
Target:  5'- cGGCGCCGCGGCggCGGGC-CgCUCgCgcucgcGGCc -3'
miRNA:   3'- -CCGCGGCGCCG--GCCCGaG-GAG-Ga-----CCG- -5'
23709 3' -66.4 NC_005261.1 + 16305 0.73 0.168591
Target:  5'- gGGCccaGCgGCGGCCGGGC-CCUCCcccucGCc -3'
miRNA:   3'- -CCG---CGgCGCCGGCCCGaGGAGGac---CG- -5'
23709 3' -66.4 NC_005261.1 + 103458 0.73 0.160768
Target:  5'- cGGcCGCCGCGcccgucGCCaGGGCgUCCagCUGGCg -3'
miRNA:   3'- -CC-GCGGCGC------CGG-CCCG-AGGagGACCG- -5'
23709 3' -66.4 NC_005261.1 + 76066 0.73 0.160768
Target:  5'- gGGCGCCaccaGGgCGGGCUgcugcgCCUCgUGGCg -3'
miRNA:   3'- -CCGCGGcg--CCgGCCCGA------GGAGgACCG- -5'
23709 3' -66.4 NC_005261.1 + 43409 0.73 0.164638
Target:  5'- aGGCGCCGgGGgCGGcCUCCgCCgccGGCg -3'
miRNA:   3'- -CCGCGGCgCCgGCCcGAGGaGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 69005 0.73 0.168591
Target:  5'- gGGCGCCGCGGCUucguuGGCgagUCCgUGGCg -3'
miRNA:   3'- -CCGCGGCGCCGGc----CCGaggAGG-ACCG- -5'
23709 3' -66.4 NC_005261.1 + 127264 0.73 0.168591
Target:  5'- aGCGCUaCGGCCGGGC-CCgcccgCCgcgggGGCa -3'
miRNA:   3'- cCGCGGcGCCGGCCCGaGGa----GGa----CCG- -5'
23709 3' -66.4 NC_005261.1 + 104175 0.73 0.168591
Target:  5'- gGGCGCCGCGcgcgggucGUCGGGCgggacggCgUCCaGGCg -3'
miRNA:   3'- -CCGCGGCGC--------CGGCCCGa------GgAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 74516 0.73 0.167794
Target:  5'- cGGCGCCGgGGCCauggcgcuuGGGCgccuagaguuugCCUgCCUGGg -3'
miRNA:   3'- -CCGCGGCgCCGG---------CCCGa-----------GGA-GGACCg -5'
23709 3' -66.4 NC_005261.1 + 30380 0.73 0.163468
Target:  5'- gGGCGCCGCGGCgCGGGUggagguggaggacaUgCgggCCggGGCa -3'
miRNA:   3'- -CCGCGGCGCCG-GCCCG--------------AgGa--GGa-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.