miRNA display CGI


Results 61 - 80 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 109811 0.73 0.149648
Target:  5'- cGGCGCCGCuuccGCCGcGGCggccgCCgaaUCUGGCg -3'
miRNA:   3'- -CCGCGGCGc---CGGC-CCGa----GGa--GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 110243 0.73 0.149289
Target:  5'- gGGCGgCGCGGCgcccggggggcugCGGGCcucCCUCgUGGCc -3'
miRNA:   3'- -CCGCgGCGCCG-------------GCCCGa--GGAGgACCG- -5'
23709 3' -66.4 NC_005261.1 + 103458 0.73 0.160768
Target:  5'- cGGcCGCCGCGcccgucGCCaGGGCgUCCagCUGGCg -3'
miRNA:   3'- -CC-GCGGCGC------CGG-CCCG-AGGagGACCG- -5'
23709 3' -66.4 NC_005261.1 + 32316 0.73 0.153274
Target:  5'- cGcCGCCGCGGCCGcGGCgCCcggCgUGGCc -3'
miRNA:   3'- cC-GCGGCGCCGGC-CCGaGGa--GgACCG- -5'
23709 3' -66.4 NC_005261.1 + 44044 0.73 0.150007
Target:  5'- cGGCgGCCGCGGgCGGGCagcagauccaggacgCCUUCcgGGCg -3'
miRNA:   3'- -CCG-CGGCGCCgGCCCGa--------------GGAGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 33823 0.73 0.153274
Target:  5'- gGGCgGCCGgggGGCgCGGGC-CC-CCUGGCg -3'
miRNA:   3'- -CCG-CGGCg--CCG-GCCCGaGGaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 2548 0.73 0.149648
Target:  5'- aGCGCCGCGGCgcugggcgCGGGCgugugguaCUCCccgGGCg -3'
miRNA:   3'- cCGCGGCGCCG--------GCCCGag------GAGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 69005 0.73 0.168591
Target:  5'- gGGCGCCGCGGCUucguuGGCgagUCCgUGGCg -3'
miRNA:   3'- -CCGCGGCGCCGGc----CCGaggAGG-ACCG- -5'
23709 3' -66.4 NC_005261.1 + 104175 0.73 0.168591
Target:  5'- gGGCGCCGCGcgcgggucGUCGGGCgggacggCgUCCaGGCg -3'
miRNA:   3'- -CCGCGGCGC--------CGGCCCGa------GgAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 127804 0.73 0.168591
Target:  5'- cGGCGCCGCGGCggCGGGC-CgCUCgCgcucgcGGCc -3'
miRNA:   3'- -CCGCGGCGCCG--GCCCGaG-GAG-Ga-----CCG- -5'
23709 3' -66.4 NC_005261.1 + 110386 0.73 0.160768
Target:  5'- uGGCGCUGCGGCUGGaccGCUUCUacgCCUGccuGCa -3'
miRNA:   3'- -CCGCGGCGCCGGCC---CGAGGA---GGAC---CG- -5'
23709 3' -66.4 NC_005261.1 + 127264 0.73 0.168591
Target:  5'- aGCGCUaCGGCCGGGC-CCgcccgCCgcgggGGCa -3'
miRNA:   3'- cCGCGGcGCCGGCCCGaGGa----GGa----CCG- -5'
23709 3' -66.4 NC_005261.1 + 77041 0.73 0.149648
Target:  5'- cGCGCgCGCGGCCcucGGCgaCCgcgCCUGGCc -3'
miRNA:   3'- cCGCG-GCGCCGGc--CCGa-GGa--GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 2744 0.73 0.145398
Target:  5'- uGCGCCGCGG-CGGGCcgucgcggcgggCCUCgaGGCc -3'
miRNA:   3'- cCGCGGCGCCgGCCCGa-----------GGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 132900 0.72 0.185264
Target:  5'- gGGCGCCGCGGgCGgcgccgagcggcGGCUCCUgCCcuucuacgUGGUc -3'
miRNA:   3'- -CCGCGGCGCCgGC------------CCGAGGA-GG--------ACCG- -5'
23709 3' -66.4 NC_005261.1 + 35963 0.72 0.185264
Target:  5'- cGGCcagGCCGCucGGCCGcuguagcggcGGCggCUCCUGGCg -3'
miRNA:   3'- -CCG---CGGCG--CCGGC----------CCGagGAGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 47624 0.72 0.185264
Target:  5'- gGGCgGCCGCGGCCGccgcGCgcaccgcgUCCUCCUcgacGGCc -3'
miRNA:   3'- -CCG-CGGCGCCGGCc---CG--------AGGAGGA----CCG- -5'
23709 3' -66.4 NC_005261.1 + 39797 0.72 0.180964
Target:  5'- gGGCGgCGCGGCCGccGGCgCCaggCuCUGGCc -3'
miRNA:   3'- -CCGCgGCGCCGGC--CCGaGGa--G-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 109879 0.72 0.176752
Target:  5'- gGGC-CCGCGGgCGGGCgCC-CCggGGCu -3'
miRNA:   3'- -CCGcGGCGCCgGCCCGaGGaGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 2693 0.72 0.180964
Target:  5'- cGCGCCGgcuuuUGGCCGGcGCcgggCC-CCUGGCc -3'
miRNA:   3'- cCGCGGC-----GCCGGCC-CGa---GGaGGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.