miRNA display CGI


Results 81 - 100 of 377 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 132900 0.72 0.185264
Target:  5'- gGGCGCCGCGGgCGgcgccgagcggcGGCUCCUgCCcuucuacgUGGUc -3'
miRNA:   3'- -CCGCGGCGCCgGC------------CCGAGGA-GG--------ACCG- -5'
23709 3' -66.4 NC_005261.1 + 118393 0.72 0.189653
Target:  5'- aGGCGCUgGCGGCCgcGGGCgCCgcagccgCgCUGGCu -3'
miRNA:   3'- -CCGCGG-CGCCGG--CCCGaGGa------G-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 47624 0.72 0.185264
Target:  5'- gGGCgGCCGCGGCCGccgcGCgcaccgcgUCCUCCUcgacGGCc -3'
miRNA:   3'- -CCG-CGGCGCCGGCc---CG--------AGGAGGA----CCG- -5'
23709 3' -66.4 NC_005261.1 + 73123 0.72 0.194134
Target:  5'- cGCGuCCGCgcgguccccgGGCCGGGCUCgCgccgCCaGGCg -3'
miRNA:   3'- cCGC-GGCG----------CCGGCCCGAG-Ga---GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 109879 0.72 0.176752
Target:  5'- gGGC-CCGCGGgCGGGCgCC-CCggGGCu -3'
miRNA:   3'- -CCGcGGCGCCgGCCCGaGGaGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 84365 0.72 0.194134
Target:  5'- aGGCGCCGCccgCGGGCUCggCCUcGGCc -3'
miRNA:   3'- -CCGCGGCGccgGCCCGAGgaGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 21781 0.72 0.172629
Target:  5'- -cCGCCGCGGCgCGGGCcgCCgcagCCgccGGCc -3'
miRNA:   3'- ccGCGGCGCCG-GCCCGa-GGa---GGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 55591 0.72 0.194134
Target:  5'- cGGCGgCGUcGCCcauGcGCUCCUCCUGGUc -3'
miRNA:   3'- -CCGCgGCGcCGGc--C-CGAGGAGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 134980 0.72 0.185264
Target:  5'- cGGCGaggaCGgGGCCgccgGGGCgCC-CCUGGCg -3'
miRNA:   3'- -CCGCg---GCgCCGG----CCCGaGGaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 2693 0.72 0.180964
Target:  5'- cGCGCCGgcuuuUGGCCGGcGCcgggCC-CCUGGCc -3'
miRNA:   3'- cCGCGGC-----GCCGGCC-CGa---GGaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 97208 0.72 0.180964
Target:  5'- aGCGCCGCGGCCacGCUCggaggCgCUGGCg -3'
miRNA:   3'- cCGCGGCGCCGGccCGAGga---G-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 39797 0.72 0.180964
Target:  5'- gGGCGgCGCGGCCGccGGCgCCaggCuCUGGCc -3'
miRNA:   3'- -CCGCgGCGCCGGC--CCGaGGa--G-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 20577 0.72 0.178426
Target:  5'- cGGCGCCgGCGGCgCGGGUggCCUacgucgacacagcgcCcCUGGCc -3'
miRNA:   3'- -CCGCGG-CGCCG-GCCCGa-GGA---------------G-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 29246 0.71 0.212994
Target:  5'- cGGCGCCGCGcGaCGGGCcgCCgCCgcuggagGGCc -3'
miRNA:   3'- -CCGCGGCGC-CgGCCCGa-GGaGGa------CCG- -5'
23709 3' -66.4 NC_005261.1 + 38929 0.71 0.212994
Target:  5'- cGCGCCaagccgGCGGCCGGGCgggCCgc--GGCg -3'
miRNA:   3'- cCGCGG------CGCCGGCCCGa--GGaggaCCG- -5'
23709 3' -66.4 NC_005261.1 + 36013 0.71 0.217949
Target:  5'- -uCGCCGCGGCCaaGGCUCUUCCccGCc -3'
miRNA:   3'- ccGCGGCGCCGGc-CCGAGGAGGacCG- -5'
23709 3' -66.4 NC_005261.1 + 99481 0.71 0.207656
Target:  5'- uGGcCGCUGCGGCCaGcGCcgccgcgUCCUCCgagGGCc -3'
miRNA:   3'- -CC-GCGGCGCCGGcC-CG-------AGGAGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 2266 0.71 0.211039
Target:  5'- cGGCGCuCGUccucGCCGGGCggcgccgccagcgCCUCCccgGGCa -3'
miRNA:   3'- -CCGCG-GCGc---CGGCCCGa------------GGAGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 32207 0.71 0.208136
Target:  5'- uGGCGCCcgacgagcuGcCGGCCGcGGCgguggCCUUCUGcGCg -3'
miRNA:   3'- -CCGCGG---------C-GCCGGC-CCGa----GGAGGAC-CG- -5'
23709 3' -66.4 NC_005261.1 + 13050 0.71 0.212994
Target:  5'- cGGgGCCGCGcgcgccccuGCCGGGCgCgUCCgccGGCc -3'
miRNA:   3'- -CCgCGGCGC---------CGGCCCGaGgAGGa--CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.