miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 4529 0.84 0.02458
Target:  5'- gGGCGCCGCGGCgaGGGCgCCgggcCCUGGCc -3'
miRNA:   3'- -CCGCGGCGCCGg-CCCGaGGa---GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 2942 0.84 0.026549
Target:  5'- -cCGCCGCGGCCGGGCUCCggcCCggacuagGGCc -3'
miRNA:   3'- ccGCGGCGCCGGCCCGAGGa--GGa------CCG- -5'
23709 3' -66.4 NC_005261.1 + 40693 0.84 0.026618
Target:  5'- cGGCGCC--GGCCGGGCUCCUCCgaaagcagcgaggggGGCg -3'
miRNA:   3'- -CCGCGGcgCCGGCCCGAGGAGGa--------------CCG- -5'
23709 3' -66.4 NC_005261.1 + 130858 0.83 0.030966
Target:  5'- cGCGCC-CGGCCGGGCgCCgcggCCUGGCc -3'
miRNA:   3'- cCGCGGcGCCGGCCCGaGGa---GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 70661 0.82 0.032594
Target:  5'- cGGCGCCGCGGCCgcGGGCcgcaCCUCCagccaGGCg -3'
miRNA:   3'- -CCGCGGCGCCGG--CCCGa---GGAGGa----CCG- -5'
23709 3' -66.4 NC_005261.1 + 134569 0.82 0.036105
Target:  5'- cGGCGCCGCGGCUgcgcaGGGCggg-CCUGGCg -3'
miRNA:   3'- -CCGCGGCGCCGG-----CCCGaggaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 1179 0.82 0.037039
Target:  5'- cGCGCCGCGGCCGGGg-CCggggCCgGGCg -3'
miRNA:   3'- cCGCGGCGCCGGCCCgaGGa---GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 106582 0.8 0.047782
Target:  5'- cGGgGCCGCcGCgCGGcGCUCCUCCUGGa -3'
miRNA:   3'- -CCgCGGCGcCG-GCC-CGAGGAGGACCg -5'
23709 3' -66.4 NC_005261.1 + 50802 0.8 0.047782
Target:  5'- cGGCGCCGCcGCCaugacGGGCUCCgcgcggCUUGGCg -3'
miRNA:   3'- -CCGCGGCGcCGG-----CCCGAGGa-----GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 31923 0.8 0.047782
Target:  5'- gGGCGCCGCcGCUGGGCUCUgCCgcGGCg -3'
miRNA:   3'- -CCGCGGCGcCGGCCCGAGGaGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 47700 0.8 0.05027
Target:  5'- cGGCGCCGCGucggcggcGUCGGGggCCUCCUcGGCg -3'
miRNA:   3'- -CCGCGGCGC--------CGGCCCgaGGAGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 115446 0.8 0.05027
Target:  5'- cGCGCuCGCGGCCGGaCUCCUCCgccucGGUg -3'
miRNA:   3'- cCGCG-GCGCCGGCCcGAGGAGGa----CCG- -5'
23709 3' -66.4 NC_005261.1 + 33749 0.8 0.052884
Target:  5'- cGGCGCCGgGGCCGGGCcCgCUCgCggGGCc -3'
miRNA:   3'- -CCGCGGCgCCGGCCCGaG-GAG-Ga-CCG- -5'
23709 3' -66.4 NC_005261.1 + 43794 0.79 0.061541
Target:  5'- gGGCGCCGCGggugagggggcGCCGGGCgcgcCCUCCgUGGa -3'
miRNA:   3'- -CCGCGGCGC-----------CGGCCCGa---GGAGG-ACCg -5'
23709 3' -66.4 NC_005261.1 + 121188 0.78 0.066369
Target:  5'- cGGgGCCGgGGCCGGGC-CCggggCCgcgGGCc -3'
miRNA:   3'- -CCgCGGCgCCGGCCCGaGGa---GGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 121079 0.78 0.075238
Target:  5'- cGGCGCCgGCGGCCGccaGCgCCUCCaGGCc -3'
miRNA:   3'- -CCGCGG-CGCCGGCc--CGaGGAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 28755 0.78 0.075238
Target:  5'- aGGaCGCCGCGGCCGGGggCg-CCUGGg -3'
miRNA:   3'- -CC-GCGGCGCCGGCCCgaGgaGGACCg -5'
23709 3' -66.4 NC_005261.1 + 5161 0.77 0.077143
Target:  5'- cGGCggGCCGCgucgagcagGGCCGGGUccUCCUCCgGGCc -3'
miRNA:   3'- -CCG--CGGCG---------CCGGCCCG--AGGAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 91127 0.77 0.079094
Target:  5'- cGCGCCGCGGCCGaGGCcucagCCgugCCgcccGGCg -3'
miRNA:   3'- cCGCGGCGCCGGC-CCGa----GGa--GGa---CCG- -5'
23709 3' -66.4 NC_005261.1 + 16261 0.77 0.081093
Target:  5'- gGGcCGCCGgGGCCGGGCUUCggcucgcCCgggggGGCg -3'
miRNA:   3'- -CC-GCGGCgCCGGCCCGAGGa------GGa----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.