miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 16261 0.77 0.081093
Target:  5'- gGGcCGCCGgGGCCGGGCUUCggcucgcCCgggggGGCg -3'
miRNA:   3'- -CC-GCGGCgCCGGCCCGAGGa------GGa----CCG- -5'
23709 3' -66.4 NC_005261.1 + 4959 0.77 0.08314
Target:  5'- aGGCGCCccCGGCCGcGGCgUCCUCUggGGCc -3'
miRNA:   3'- -CCGCGGc-GCCGGC-CCG-AGGAGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 108178 0.77 0.087382
Target:  5'- gGGCG-CGCGGCCGcGGCUCCg---GGCg -3'
miRNA:   3'- -CCGCgGCGCCGGC-CCGAGGaggaCCG- -5'
23709 3' -66.4 NC_005261.1 + 1399 0.76 0.089358
Target:  5'- gGGCGCCGCGGCCgcggcggcggcggGGGCggcgcccgCCUCCagcaccagcGGCg -3'
miRNA:   3'- -CCGCGGCGCCGG-------------CCCGa-------GGAGGa--------CCG- -5'
23709 3' -66.4 NC_005261.1 + 28833 0.76 0.09183
Target:  5'- aGGCgGCCGCGGCUGaGGCggCCgUCgUGGCc -3'
miRNA:   3'- -CCG-CGGCGCCGGC-CCGa-GG-AGgACCG- -5'
23709 3' -66.4 NC_005261.1 + 120595 0.76 0.096492
Target:  5'- uGGCcgucGCCuGCGGCCucggcgccgugGGGCUCCUgCUGGUg -3'
miRNA:   3'- -CCG----CGG-CGCCGG-----------CCCGAGGAgGACCG- -5'
23709 3' -66.4 NC_005261.1 + 97129 0.76 0.098906
Target:  5'- aGGCGCCGCGGCCacGCUCggaggCgCUGGCg -3'
miRNA:   3'- -CCGCGGCGCCGGccCGAGga---G-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 63075 0.76 0.101378
Target:  5'- uGGCGCacaGCGG-CGGGUacgCCUCCUGGa -3'
miRNA:   3'- -CCGCGg--CGCCgGCCCGa--GGAGGACCg -5'
23709 3' -66.4 NC_005261.1 + 60347 0.76 0.103907
Target:  5'- cGGCGCCGCGGCCGcGCg---CCaGGCa -3'
miRNA:   3'- -CCGCGGCGCCGGCcCGaggaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 4589 0.75 0.106495
Target:  5'- gGGCGCCcccCGGCgccaGGGCUCC-CCUcGGCg -3'
miRNA:   3'- -CCGCGGc--GCCGg---CCCGAGGaGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 94476 0.75 0.106495
Target:  5'- cGGCGUCGUcccgcgGGCCGGGCaCCUCCauuaaaugGGCc -3'
miRNA:   3'- -CCGCGGCG------CCGGCCCGaGGAGGa-------CCG- -5'
23709 3' -66.4 NC_005261.1 + 72499 0.75 0.109144
Target:  5'- aGCGCCGCGcGaagCGGGCgccgcaUCCUCCUuGGCg -3'
miRNA:   3'- cCGCGGCGC-Cg--GCCCG------AGGAGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 115140 0.75 0.111855
Target:  5'- uGGUGUCGUacacgagccgggGGUCGGGCgCCUCCUGcGCg -3'
miRNA:   3'- -CCGCGGCG------------CCGGCCCGaGGAGGAC-CG- -5'
23709 3' -66.4 NC_005261.1 + 103506 0.75 0.111855
Target:  5'- cGGCGCCGCGGacggcggcguCCGcGGCauccgccgCCUCCUcGGCc -3'
miRNA:   3'- -CCGCGGCGCC----------GGC-CCGa-------GGAGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 118922 0.75 0.114628
Target:  5'- cGGCGCCGCGGgCGcGGCgCCgcgcggCUGGCc -3'
miRNA:   3'- -CCGCGGCGCCgGC-CCGaGGag----GACCG- -5'
23709 3' -66.4 NC_005261.1 + 4389 0.75 0.114909
Target:  5'- aGCGCaCGCGGCCGGGCggcggcggcgcgcugCCgggCCaGGCc -3'
miRNA:   3'- cCGCG-GCGCCGGCCCGa--------------GGa--GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 77554 0.75 0.117466
Target:  5'- cGGCGCCGCcGCCaGuGGCgccgCCgcgcCCUGGCa -3'
miRNA:   3'- -CCGCGGCGcCGG-C-CCGa---GGa---GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 35305 0.75 0.117466
Target:  5'- aGCGCCG-GGCCGGGCUgCUCggGGa -3'
miRNA:   3'- cCGCGGCgCCGGCCCGAgGAGgaCCg -5'
23709 3' -66.4 NC_005261.1 + 1494 0.75 0.117466
Target:  5'- aGGCcaccGCCGCGGCCGGcaGCUCgUCg-GGCg -3'
miRNA:   3'- -CCG----CGGCGCCGGCC--CGAGgAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 67773 0.75 0.120369
Target:  5'- aGGCGCCGCccccGGCCGccccCUCCUCCgccucGGCg -3'
miRNA:   3'- -CCGCGGCG----CCGGCcc--GAGGAGGa----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.