miRNA display CGI


Results 61 - 80 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 32316 0.73 0.153274
Target:  5'- cGcCGCCGCGGCCGcGGCgCCcggCgUGGCc -3'
miRNA:   3'- cC-GCGGCGCCGGC-CCGaGGa--GgACCG- -5'
23709 3' -66.4 NC_005261.1 + 76066 0.73 0.160768
Target:  5'- gGGCGCCaccaGGgCGGGCUgcugcgCCUCgUGGCg -3'
miRNA:   3'- -CCGCGGcg--CCgGCCCGA------GGAGgACCG- -5'
23709 3' -66.4 NC_005261.1 + 28283 0.73 0.160768
Target:  5'- cGcCGCCGCGGCCGcGGUcgUCUCCUucguucgcGGCg -3'
miRNA:   3'- cC-GCGGCGCCGGC-CCGa-GGAGGA--------CCG- -5'
23709 3' -66.4 NC_005261.1 + 110386 0.73 0.160768
Target:  5'- uGGCGCUGCGGCUGGaccGCUUCUacgCCUGccuGCa -3'
miRNA:   3'- -CCGCGGCGCCGGCC---CGAGGA---GGAC---CG- -5'
23709 3' -66.4 NC_005261.1 + 103458 0.73 0.160768
Target:  5'- cGGcCGCCGCGcccgucGCCaGGGCgUCCagCUGGCg -3'
miRNA:   3'- -CC-GCGGCGC------CGG-CCCG-AGGagGACCG- -5'
23709 3' -66.4 NC_005261.1 + 30380 0.73 0.163468
Target:  5'- gGGCGCCGCGGCgCGGGUggagguggaggacaUgCgggCCggGGCa -3'
miRNA:   3'- -CCGCGGCGCCG-GCCCG--------------AgGa--GGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 43409 0.73 0.164638
Target:  5'- aGGCGCCGgGGgCGGcCUCCgCCgccGGCg -3'
miRNA:   3'- -CCGCGGCgCCgGCCcGAGGaGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 74516 0.73 0.167794
Target:  5'- cGGCGCCGgGGCCauggcgcuuGGGCgccuagaguuugCCUgCCUGGg -3'
miRNA:   3'- -CCGCGGCgCCGG---------CCCGa-----------GGA-GGACCg -5'
23709 3' -66.4 NC_005261.1 + 104175 0.73 0.168591
Target:  5'- gGGCGCCGCGcgcgggucGUCGGGCgggacggCgUCCaGGCg -3'
miRNA:   3'- -CCGCGGCGC--------CGGCCCGa------GgAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 127804 0.73 0.168591
Target:  5'- cGGCGCCGCGGCggCGGGC-CgCUCgCgcucgcGGCc -3'
miRNA:   3'- -CCGCGGCGCCG--GCCCGaG-GAG-Ga-----CCG- -5'
23709 3' -66.4 NC_005261.1 + 69005 0.73 0.168591
Target:  5'- gGGCGCCGCGGCUucguuGGCgagUCCgUGGCg -3'
miRNA:   3'- -CCGCGGCGCCGGc----CCGaggAGG-ACCG- -5'
23709 3' -66.4 NC_005261.1 + 16305 0.73 0.168591
Target:  5'- gGGCccaGCgGCGGCCGGGC-CCUCCcccucGCc -3'
miRNA:   3'- -CCG---CGgCGCCGGCCCGaGGAGGac---CG- -5'
23709 3' -66.4 NC_005261.1 + 98697 0.73 0.168591
Target:  5'- aGGCGCgGCcggagcuggGGCCGGGgUCCggCCUugggGGCa -3'
miRNA:   3'- -CCGCGgCG---------CCGGCCCgAGGa-GGA----CCG- -5'
23709 3' -66.4 NC_005261.1 + 127264 0.73 0.168591
Target:  5'- aGCGCUaCGGCCGGGC-CCgcccgCCgcgggGGCa -3'
miRNA:   3'- cCGCGGcGCCGGCCCGaGGa----GGa----CCG- -5'
23709 3' -66.4 NC_005261.1 + 43278 0.72 0.171408
Target:  5'- gGGCGUCGCGGCCgccuuucccgcgggGGGCgCCggcagCCcGGCc -3'
miRNA:   3'- -CCGCGGCGCCGG--------------CCCGaGGa----GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 68275 0.72 0.172629
Target:  5'- uGCGCCcgcGCGGCgGGGCcCCggCCgcgGGCg -3'
miRNA:   3'- cCGCGG---CGCCGgCCCGaGGa-GGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 21781 0.72 0.172629
Target:  5'- -cCGCCGCGGCgCGGGCcgCCgcagCCgccGGCc -3'
miRNA:   3'- ccGCGGCGCCG-GCCCGa-GGa---GGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 59661 0.72 0.176752
Target:  5'- gGGCGaCUGCGGCCGGGUcgucgaagCCgcCCUcGGCc -3'
miRNA:   3'- -CCGC-GGCGCCGGCCCGa-------GGa-GGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 109879 0.72 0.176752
Target:  5'- gGGC-CCGCGGgCGGGCgCC-CCggGGCu -3'
miRNA:   3'- -CCGcGGCGCCgGCCCGaGGaGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 20577 0.72 0.178426
Target:  5'- cGGCGCCgGCGGCgCGGGUggCCUacgucgacacagcgcCcCUGGCc -3'
miRNA:   3'- -CCGCGG-CGCCG-GCCCGa-GGA---------------G-GACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.