miRNA display CGI


Results 81 - 100 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 39797 0.72 0.180964
Target:  5'- gGGCGgCGCGGCCGccGGCgCCaggCuCUGGCc -3'
miRNA:   3'- -CCGCgGCGCCGGC--CCGaGGa--G-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 2693 0.72 0.180964
Target:  5'- cGCGCCGgcuuuUGGCCGGcGCcgggCC-CCUGGCc -3'
miRNA:   3'- cCGCGGC-----GCCGGCC-CGa---GGaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 97208 0.72 0.180964
Target:  5'- aGCGCCGCGGCCacGCUCggaggCgCUGGCg -3'
miRNA:   3'- cCGCGGCGCCGGccCGAGga---G-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 36583 0.72 0.180964
Target:  5'- gGGCccGCCGCGGCCaccggggggGGGCagCgCUCCUGcGCc -3'
miRNA:   3'- -CCG--CGGCGCCGG---------CCCGa-G-GAGGAC-CG- -5'
23709 3' -66.4 NC_005261.1 + 132900 0.72 0.185264
Target:  5'- gGGCGCCGCGGgCGgcgccgagcggcGGCUCCUgCCcuucuacgUGGUc -3'
miRNA:   3'- -CCGCGGCGCCgGC------------CCGAGGA-GG--------ACCG- -5'
23709 3' -66.4 NC_005261.1 + 134980 0.72 0.185264
Target:  5'- cGGCGaggaCGgGGCCgccgGGGCgCC-CCUGGCg -3'
miRNA:   3'- -CCGCg---GCgCCGG----CCCGaGGaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 35963 0.72 0.185264
Target:  5'- cGGCcagGCCGCucGGCCGcuguagcggcGGCggCUCCUGGCg -3'
miRNA:   3'- -CCG---CGGCG--CCGGC----------CCGagGAGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 47624 0.72 0.185264
Target:  5'- gGGCgGCCGCGGCCGccgcGCgcaccgcgUCCUCCUcgacGGCc -3'
miRNA:   3'- -CCG-CGGCGCCGGCc---CG--------AGGAGGA----CCG- -5'
23709 3' -66.4 NC_005261.1 + 118393 0.72 0.189653
Target:  5'- aGGCGCUgGCGGCCgcGGGCgCCgcagccgCgCUGGCu -3'
miRNA:   3'- -CCGCGG-CGCCGG--CCCGaGGa------G-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 73123 0.72 0.194134
Target:  5'- cGCGuCCGCgcgguccccgGGCCGGGCUCgCgccgCCaGGCg -3'
miRNA:   3'- cCGC-GGCG----------CCGGCCCGAG-Ga---GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 118162 0.72 0.194134
Target:  5'- uGGcCGUCGCGGCgGGGCUugCCgUCUGGg -3'
miRNA:   3'- -CC-GCGGCGCCGgCCCGA--GGaGGACCg -5'
23709 3' -66.4 NC_005261.1 + 84365 0.72 0.194134
Target:  5'- aGGCGCCGCccgCGGGCUCggCCUcGGCc -3'
miRNA:   3'- -CCGCGGCGccgGCCCGAGgaGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 55591 0.72 0.194134
Target:  5'- cGGCGgCGUcGCCcauGcGCUCCUCCUGGUc -3'
miRNA:   3'- -CCGCgGCGcCGGc--C-CGAGGAGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 42671 0.71 0.198707
Target:  5'- --aGCgGCGGCCGGGCcgCCgCC-GGCa -3'
miRNA:   3'- ccgCGgCGCCGGCCCGa-GGaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 3342 0.71 0.198707
Target:  5'- cGCGCCGCGGCgccCGGcGCgccggCCUUCagGGCc -3'
miRNA:   3'- cCGCGGCGCCG---GCC-CGa----GGAGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 50915 0.71 0.202904
Target:  5'- cGGCGCCGCcucgccgGGCgCgGGGCUCC-CCUG-Cu -3'
miRNA:   3'- -CCGCGGCG-------CCG-G-CCCGAGGaGGACcG- -5'
23709 3' -66.4 NC_005261.1 + 23426 0.71 0.203374
Target:  5'- aGGCGCUGCGcGUCgGGGCgccagUCCUCagGGCa -3'
miRNA:   3'- -CCGCGGCGC-CGG-CCCG-----AGGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 17913 0.71 0.203374
Target:  5'- cGGCGCCgauuagcaGCGaGUCGGGC-CCg-CUGGCg -3'
miRNA:   3'- -CCGCGG--------CGC-CGGCCCGaGGagGACCG- -5'
23709 3' -66.4 NC_005261.1 + 99481 0.71 0.207656
Target:  5'- uGGcCGCUGCGGCCaGcGCcgccgcgUCCUCCgagGGCc -3'
miRNA:   3'- -CC-GCGGCGCCGGcC-CG-------AGGAGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 32207 0.71 0.208136
Target:  5'- uGGCGCCcgacgagcuGcCGGCCGcGGCgguggCCUUCUGcGCg -3'
miRNA:   3'- -CCGCGG---------C-GCCGGC-CCGa----GGAGGAC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.