miRNA display CGI


Results 101 - 120 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 2266 0.71 0.211039
Target:  5'- cGGCGCuCGUccucGCCGGGCggcgccgccagcgCCUCCccgGGCa -3'
miRNA:   3'- -CCGCG-GCGc---CGGCCCGa------------GGAGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 13050 0.71 0.212994
Target:  5'- cGGgGCCGCGcgcgccccuGCCGGGCgCgUCCgccGGCc -3'
miRNA:   3'- -CCgCGGCGC---------CGGCCCGaGgAGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 29246 0.71 0.212994
Target:  5'- cGGCGCCGCGcGaCGGGCcgCCgCCgcuggagGGCc -3'
miRNA:   3'- -CCGCGGCGC-CgGCCCGa-GGaGGa------CCG- -5'
23709 3' -66.4 NC_005261.1 + 38929 0.71 0.212994
Target:  5'- cGCGCCaagccgGCGGCCGGGCgggCCgc--GGCg -3'
miRNA:   3'- cCGCGG------CGCCGGCCCGa--GGaggaCCG- -5'
23709 3' -66.4 NC_005261.1 + 89418 0.71 0.212994
Target:  5'- cGGCGCgugCGCGGCCgccGGGCUCC-CC-GcGCc -3'
miRNA:   3'- -CCGCG---GCGCCGG---CCCGAGGaGGaC-CG- -5'
23709 3' -66.4 NC_005261.1 + 11944 0.71 0.212994
Target:  5'- cGCGCCGCGGC--GGCUCg-CCcGGCg -3'
miRNA:   3'- cCGCGGCGCCGgcCCGAGgaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 117355 0.71 0.217949
Target:  5'- aGGCGCCGCccgcaaGGCC--GC-CCUCCUGGa -3'
miRNA:   3'- -CCGCGGCG------CCGGccCGaGGAGGACCg -5'
23709 3' -66.4 NC_005261.1 + 24135 0.71 0.217949
Target:  5'- gGGgGCUGggugGGCgGGGCUCa-CCUGGCg -3'
miRNA:   3'- -CCgCGGCg---CCGgCCCGAGgaGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 36013 0.71 0.217949
Target:  5'- -uCGCCGCGGCCaaGGCUCUUCCccGCc -3'
miRNA:   3'- ccGCGGCGCCGGc-CCGAGGAGGacCG- -5'
23709 3' -66.4 NC_005261.1 + 44731 0.71 0.217949
Target:  5'- gGGCGCUGCaGCUGGGCcCCgagCUGcGCg -3'
miRNA:   3'- -CCGCGGCGcCGGCCCGaGGag-GAC-CG- -5'
23709 3' -66.4 NC_005261.1 + 133353 0.71 0.217949
Target:  5'- cGGCGCUGCcGCgcaGGGCUUCggcugCCUGcGCg -3'
miRNA:   3'- -CCGCGGCGcCGg--CCCGAGGa----GGAC-CG- -5'
23709 3' -66.4 NC_005261.1 + 56827 0.71 0.217949
Target:  5'- uGGUGCCGCGGCgGcacGGCaagaCCugguUCCUGGUg -3'
miRNA:   3'- -CCGCGGCGCCGgC---CCGa---GG----AGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 68148 0.71 0.219958
Target:  5'- cGCGCCGUGGCCGGcuacacgcgcgcggaGCUCgCgcgcgCCgcgGGCc -3'
miRNA:   3'- cCGCGGCGCCGGCC---------------CGAG-Ga----GGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 102957 0.71 0.223001
Target:  5'- cGGCgGCCGCGGgcgccgCGGGCUCCgCCgccGCg -3'
miRNA:   3'- -CCG-CGGCGCCg-----GCCCGAGGaGGac-CG- -5'
23709 3' -66.4 NC_005261.1 + 59394 0.71 0.223001
Target:  5'- cGGCGCCGagcCCGGGCUCg-CC-GGCg -3'
miRNA:   3'- -CCGCGGCgccGGCCCGAGgaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 128804 0.71 0.223001
Target:  5'- gGGC-CCGCGGCgGGGCUCgCgCUgcGGCu -3'
miRNA:   3'- -CCGcGGCGCCGgCCCGAG-GaGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 133846 0.71 0.22505
Target:  5'- cGCGCCGUGGCCGGcGCgcgcgacugccgcgCCUaCCUguGGUc -3'
miRNA:   3'- cCGCGGCGCCGGCC-CGa-------------GGA-GGA--CCG- -5'
23709 3' -66.4 NC_005261.1 + 15926 0.71 0.228154
Target:  5'- cGGgGCCGgGGCCGGGgC-CCgggcaggagCCgggGGCg -3'
miRNA:   3'- -CCgCGGCgCCGGCCC-GaGGa--------GGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 53617 0.71 0.228154
Target:  5'- --gGCCGUGGCCaGGCUCCgCCgGaGCa -3'
miRNA:   3'- ccgCGGCGCCGGcCCGAGGaGGaC-CG- -5'
23709 3' -66.4 NC_005261.1 + 52228 0.71 0.228154
Target:  5'- cGGCGCUGCGGCCGGuacgGUUUCgugggagGGCg -3'
miRNA:   3'- -CCGCGGCGCCGGCC----CGAGGagga---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.