miRNA display CGI


Results 21 - 40 of 377 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 5976 0.66 0.448762
Target:  5'- cGGCuccucuGCCGCGcGUCuccGCUCCUCCcgcGGCg -3'
miRNA:   3'- -CCG------CGGCGC-CGGcc-CGAGGAGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 52965 0.66 0.448762
Target:  5'- aGCGCCGC-GCCGGuGCggcgCCggCaGGCg -3'
miRNA:   3'- cCGCGGCGcCGGCC-CGa---GGagGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 135065 0.66 0.448762
Target:  5'- cGGCccGCCGCuuuccGGCggCGGGCUCgCggCCcGGCg -3'
miRNA:   3'- -CCG--CGGCG-----CCG--GCCCGAG-Ga-GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 110827 0.66 0.448762
Target:  5'- cGGgGCCGCGGaCGaGuuUCCgcugcccgcCCUGGCg -3'
miRNA:   3'- -CCgCGGCGCCgGC-CcgAGGa--------GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 109005 0.66 0.448762
Target:  5'- cGCGCUGCGcguucaCCGGGCcgaacgCCgCCgUGGCg -3'
miRNA:   3'- cCGCGGCGCc-----GGCCCGa-----GGaGG-ACCG- -5'
23709 3' -66.4 NC_005261.1 + 107718 0.66 0.448762
Target:  5'- cGCuGCCGCGGCagGcGGCUgCgCCUcGGCc -3'
miRNA:   3'- cCG-CGGCGCCGg-C-CCGAgGaGGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 102728 0.66 0.448762
Target:  5'- cGCGcCCGCcGCCaGGGCgUUCUUCagGGCg -3'
miRNA:   3'- cCGC-GGCGcCGG-CCCG-AGGAGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 96331 0.66 0.446202
Target:  5'- uGGCcuGgCGCGGCCGcGCgcaCCUgacgcccugacuggCCUGGCg -3'
miRNA:   3'- -CCG--CgGCGCCGGCcCGa--GGA--------------GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 103915 0.66 0.441108
Target:  5'- cGCGCCGCcaGGUCGGGCgcggCgUCUgccagacgcugcagcGGCg -3'
miRNA:   3'- cCGCGGCG--CCGGCCCGa---GgAGGa--------------CCG- -5'
23709 3' -66.4 NC_005261.1 + 31175 0.66 0.440263
Target:  5'- aGCGCCGCGGCgCuGGCggCCUaCUGccGCc -3'
miRNA:   3'- cCGCGGCGCCG-GcCCGa-GGAgGAC--CG- -5'
23709 3' -66.4 NC_005261.1 + 87064 0.66 0.440263
Target:  5'- aGCGCCaccGCGGCCGGGC-CCagCacGUa -3'
miRNA:   3'- cCGCGG---CGCCGGCCCGaGGagGacCG- -5'
23709 3' -66.4 NC_005261.1 + 10702 0.66 0.439418
Target:  5'- aGGCGuUCGCGGgccgccuCCGGGCcccccucuUCCUCCgccGCc -3'
miRNA:   3'- -CCGC-GGCGCC-------GGCCCG--------AGGAGGac-CG- -5'
23709 3' -66.4 NC_005261.1 + 4300 0.66 0.439418
Target:  5'- gGGCcCCGCGGCCGccgcguagcgcgcGGCcgCCUCgCggaucucggGGCa -3'
miRNA:   3'- -CCGcGGCGCCGGC-------------CCGa-GGAG-Ga--------CCG- -5'
23709 3' -66.4 NC_005261.1 + 102387 0.66 0.439418
Target:  5'- aGCGCgGCGcgcagcuccucgcGCCaGcGCUCCUCCUGccGCu -3'
miRNA:   3'- cCGCGgCGC-------------CGGcC-CGAGGAGGAC--CG- -5'
23709 3' -66.4 NC_005261.1 + 72625 0.66 0.437731
Target:  5'- gGGCGCagggGCGGCUuuauaguccccuggGGGCcgCCUCg-GGCc -3'
miRNA:   3'- -CCGCGg---CGCCGG--------------CCCGa-GGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 125898 0.66 0.431856
Target:  5'- aGGCGCCugagccagauguGUGGCgGGGCUCg-CCacGCg -3'
miRNA:   3'- -CCGCGG------------CGCCGgCCCGAGgaGGacCG- -5'
23709 3' -66.4 NC_005261.1 + 28097 0.66 0.431856
Target:  5'- cGCGCCGCaGCaaagGGGUUagaggggggggCCUCgaGGCg -3'
miRNA:   3'- cCGCGGCGcCGg---CCCGA-----------GGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 5123 0.66 0.431856
Target:  5'- cGGCGCgGgCGGCCcgccGGcGCUCgCgcgCCUcGGCc -3'
miRNA:   3'- -CCGCGgC-GCCGG----CC-CGAG-Ga--GGA-CCG- -5'
23709 3' -66.4 NC_005261.1 + 56287 0.66 0.431856
Target:  5'- uGGCGCCGCuguucGCCGccacGGCcucccgCCUgcuacugacgagCCUGGCg -3'
miRNA:   3'- -CCGCGGCGc----CGGC----CCGa-----GGA------------GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 4441 0.66 0.431856
Target:  5'- gGGCGUCaGCaG-CGGGC-CCUCCagcGGCg -3'
miRNA:   3'- -CCGCGG-CGcCgGCCCGaGGAGGa--CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.