miRNA display CGI


Results 41 - 60 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 28097 0.66 0.431856
Target:  5'- cGCGCCGCaGCaaagGGGUUagaggggggggCCUCgaGGCg -3'
miRNA:   3'- cCGCGGCGcCGg---CCCGA-----------GGAGgaCCG- -5'
23709 3' -66.4 NC_005261.1 + 80257 0.66 0.431856
Target:  5'- -cCGCCGCGcGCCaGGUacgUCUCCaGGCc -3'
miRNA:   3'- ccGCGGCGC-CGGcCCGa--GGAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 61034 0.66 0.43102
Target:  5'- cGGCaCCGCGGCagcuggcuggugcUGGGCcuggagcacuUCUUCCUgccGGCg -3'
miRNA:   3'- -CCGcGGCGCCG-------------GCCCG----------AGGAGGA---CCG- -5'
23709 3' -66.4 NC_005261.1 + 119127 0.66 0.423543
Target:  5'- --gGCCGCGGCCGcGGCgcggCCaUCUcGGa -3'
miRNA:   3'- ccgCGGCGCCGGC-CCGa---GG-AGGaCCg -5'
23709 3' -66.4 NC_005261.1 + 17316 0.66 0.423543
Target:  5'- cGGgGUCGCGGcCCGGcccggcccaGCUCCcgCCccgcccgGGCa -3'
miRNA:   3'- -CCgCGGCGCC-GGCC---------CGAGGa-GGa------CCG- -5'
23709 3' -66.4 NC_005261.1 + 27904 0.66 0.423543
Target:  5'- cGGcCGCCGCuGCCGaGCUuCCUuCCUcGCg -3'
miRNA:   3'- -CC-GCGGCGcCGGCcCGA-GGA-GGAcCG- -5'
23709 3' -66.4 NC_005261.1 + 29342 0.66 0.423543
Target:  5'- uGCGCUucgGCGGCgCGGGCgacaCUCgCgagGGCc -3'
miRNA:   3'- cCGCGG---CGCCG-GCCCGag--GAG-Ga--CCG- -5'
23709 3' -66.4 NC_005261.1 + 59443 0.66 0.423543
Target:  5'- aGGCGCCggcagcagcGCGGCCGcGGCgUCggggGGCa -3'
miRNA:   3'- -CCGCGG---------CGCCGGC-CCGaGGaggaCCG- -5'
23709 3' -66.4 NC_005261.1 + 107885 0.66 0.423543
Target:  5'- cGCGcCCGCGGCCc-GCUUgUCCgcGGCc -3'
miRNA:   3'- cCGC-GGCGCCGGccCGAGgAGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 132379 0.66 0.423543
Target:  5'- cGCGCuCGCGGCgcuguucccCGaGGCcgCCgccgacgCCUGGCc -3'
miRNA:   3'- cCGCG-GCGCCG---------GC-CCGa-GGa------GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 21414 0.66 0.423543
Target:  5'- cGCGCCGCgccGGCCGGuGCaguUCUUCCg--- -3'
miRNA:   3'- cCGCGGCG---CCGGCC-CG---AGGAGGaccg -5'
23709 3' -66.4 NC_005261.1 + 28215 0.66 0.423543
Target:  5'- cGCuGCCGCGGCCccaGCUaCCcCCcGGCg -3'
miRNA:   3'- cCG-CGGCGCCGGcc-CGA-GGaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 97671 0.66 0.423543
Target:  5'- cGGCGuCCGCGGggcUUGGGCggggCUgCCggGGCg -3'
miRNA:   3'- -CCGC-GGCGCC---GGCCCGa---GGaGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 76016 0.66 0.421068
Target:  5'- uGGCGCCGCGcagcGCCgcGGGCgCC-CCgcgcgccaucagcgUGGCc -3'
miRNA:   3'- -CCGCGGCGC----CGG--CCCGaGGaGG--------------ACCG- -5'
23709 3' -66.4 NC_005261.1 + 63009 0.66 0.415327
Target:  5'- cGGCgGCCGCGcccGCgCGGGCgCCggcgCCcgcGGCg -3'
miRNA:   3'- -CCG-CGGCGC---CG-GCCCGaGGa---GGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 81610 0.66 0.415327
Target:  5'- cGGCGcCCGCGG-CGGGUUCagcaccgCCgcgagcGGCc -3'
miRNA:   3'- -CCGC-GGCGCCgGCCCGAGga-----GGa-----CCG- -5'
23709 3' -66.4 NC_005261.1 + 87582 0.66 0.415327
Target:  5'- cGCGCCGCccaGGCCGGuGgUCUuggugCC-GGCg -3'
miRNA:   3'- cCGCGGCG---CCGGCC-CgAGGa----GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 113303 0.66 0.415327
Target:  5'- cGCuGCCGCgGGCCuGGGC-CCggCUGcGCg -3'
miRNA:   3'- cCG-CGGCG-CCGG-CCCGaGGagGAC-CG- -5'
23709 3' -66.4 NC_005261.1 + 126027 0.66 0.415327
Target:  5'- cGCGCCgcGCGGCCGcGcguacgaguGCUCCcgcUCC-GGCg -3'
miRNA:   3'- cCGCGG--CGCCGGC-C---------CGAGG---AGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 32389 0.66 0.415327
Target:  5'- cGGCGCgGCGGCguccCGGaGCgcgugCCgCCgccGGCg -3'
miRNA:   3'- -CCGCGgCGCCG----GCC-CGa----GGaGGa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.