miRNA display CGI


Results 61 - 80 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 81610 0.66 0.415327
Target:  5'- cGGCGcCCGCGG-CGGGUUCagcaccgCCgcgagcGGCc -3'
miRNA:   3'- -CCGC-GGCGCCgGCCCGAGga-----GGa-----CCG- -5'
23709 3' -66.4 NC_005261.1 + 87582 0.66 0.415327
Target:  5'- cGCGCCGCccaGGCCGGuGgUCUuggugCC-GGCg -3'
miRNA:   3'- cCGCGGCG---CCGGCC-CgAGGa----GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 113303 0.66 0.415327
Target:  5'- cGCuGCCGCgGGCCuGGGC-CCggCUGcGCg -3'
miRNA:   3'- cCG-CGGCG-CCGG-CCCGaGGagGAC-CG- -5'
23709 3' -66.4 NC_005261.1 + 126027 0.66 0.415327
Target:  5'- cGCGCCgcGCGGCCGcGcguacgaguGCUCCcgcUCC-GGCg -3'
miRNA:   3'- cCGCGG--CGCCGGC-C---------CGAGG---AGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 137754 0.66 0.415327
Target:  5'- cGGCGCgCGCGggggcgggguGCgGGGCgcgCCcCCgGGCc -3'
miRNA:   3'- -CCGCG-GCGC----------CGgCCCGa--GGaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 104266 0.66 0.414511
Target:  5'- aGCGCCGCGGUCucggcGGCUgcgcgggCCUCgCaGGCc -3'
miRNA:   3'- cCGCGGCGCCGGc----CCGA-------GGAG-GaCCG- -5'
23709 3' -66.4 NC_005261.1 + 321 0.67 0.40721
Target:  5'- cGGCgGCUGCGGCgGcGGCUgcggcggcCCgcagCCcGGCg -3'
miRNA:   3'- -CCG-CGGCGCCGgC-CCGA--------GGa---GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 23954 0.67 0.40721
Target:  5'- cGGgGUCGuCGGCaCGcGGUUCCugcuuUCCgGGCg -3'
miRNA:   3'- -CCgCGGC-GCCG-GC-CCGAGG-----AGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 34922 0.67 0.40721
Target:  5'- gGGCGCgGCcacgcggggggcGGCCGGcGCgacCCgggCCcGGCg -3'
miRNA:   3'- -CCGCGgCG------------CCGGCC-CGa--GGa--GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 120241 0.67 0.40721
Target:  5'- aGCGCCGCuucGCCGcGGCUgCCacgCC-GGCc -3'
miRNA:   3'- cCGCGGCGc--CGGC-CCGA-GGa--GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 137992 0.67 0.40721
Target:  5'- cGGCgGCUGCGGCgGcGGCUgcggcggcCCgcagCCcGGCg -3'
miRNA:   3'- -CCG-CGGCGCCGgC-CCGA--------GGa---GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 10674 0.67 0.40721
Target:  5'- gGGUGCUGCcGCCGucC-CCUCCcGGCa -3'
miRNA:   3'- -CCGCGGCGcCGGCccGaGGAGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 85577 0.67 0.40721
Target:  5'- cGGCGCCGCGaCCGcGGC--CUCCgcgaGCg -3'
miRNA:   3'- -CCGCGGCGCcGGC-CCGagGAGGac--CG- -5'
23709 3' -66.4 NC_005261.1 + 115384 0.67 0.40721
Target:  5'- cGGCGUCGUGGUcuucagCGGGUcgUCgaCCgcgGGCg -3'
miRNA:   3'- -CCGCGGCGCCG------GCCCG--AGgaGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 118864 0.67 0.40721
Target:  5'- cGCGcCCGCGGCCcuGGCcucggCCaCCgcgGGCg -3'
miRNA:   3'- cCGC-GGCGCCGGc-CCGa----GGaGGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 58264 0.67 0.40721
Target:  5'- cGCGCCGCGcucGCCGcGCUCaCggggCC-GGCg -3'
miRNA:   3'- cCGCGGCGC---CGGCcCGAG-Ga---GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 70333 0.67 0.406403
Target:  5'- aGGCGCaCGCgucgagcgGGCCGgggaccgggaggcGGCgcgCCUCCacGGCg -3'
miRNA:   3'- -CCGCG-GCG--------CCGGC-------------CCGa--GGAGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 36951 0.67 0.406403
Target:  5'- uGGCGCaaggcccgccgCGCGGCgcagagcucggugCGGGCUCCagCCggagcccgcgGGCu -3'
miRNA:   3'- -CCGCG-----------GCGCCG-------------GCCCGAGGa-GGa---------CCG- -5'
23709 3' -66.4 NC_005261.1 + 75207 0.67 0.399193
Target:  5'- uGGCgGCCGCGGUggCGGcGCUgCagUCCagcgGGCg -3'
miRNA:   3'- -CCG-CGGCGCCG--GCC-CGAgG--AGGa---CCG- -5'
23709 3' -66.4 NC_005261.1 + 71150 0.67 0.399193
Target:  5'- aGCGCCGCcccGGCa-GGCUCUgggaugaacgcgUCCgGGCg -3'
miRNA:   3'- cCGCGGCG---CCGgcCCGAGG------------AGGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.