miRNA display CGI


Results 81 - 100 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 43450 0.67 0.399193
Target:  5'- cGGCGCCuggacGUcGCCGGGCgggUgCUGGCg -3'
miRNA:   3'- -CCGCGG-----CGcCGGCCCGaggAgGACCG- -5'
23709 3' -66.4 NC_005261.1 + 110463 0.67 0.399193
Target:  5'- gGGUGCC-UGGgCGGGCUgCUCUcgUGGa -3'
miRNA:   3'- -CCGCGGcGCCgGCCCGAgGAGG--ACCg -5'
23709 3' -66.4 NC_005261.1 + 29687 0.67 0.399193
Target:  5'- gGGCGCUGCcGCaCGuGGCggCCUgCgUGGCc -3'
miRNA:   3'- -CCGCGGCGcCG-GC-CCGa-GGA-GgACCG- -5'
23709 3' -66.4 NC_005261.1 + 45625 0.67 0.399193
Target:  5'- cGGCGCgGCGcGgCGGGC-CCgcgCCgGaGCa -3'
miRNA:   3'- -CCGCGgCGC-CgGCCCGaGGa--GGaC-CG- -5'
23709 3' -66.4 NC_005261.1 + 58472 0.67 0.399193
Target:  5'- gGGCgcguaugaGCCGCaGGCCGGcGCgcggCCgcUUUUGGCg -3'
miRNA:   3'- -CCG--------CGGCG-CCGGCC-CGa---GG--AGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 71150 0.67 0.399193
Target:  5'- aGCGCCGCcccGGCa-GGCUCUgggaugaacgcgUCCgGGCg -3'
miRNA:   3'- cCGCGGCG---CCGgcCCGAGG------------AGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 75207 0.67 0.399193
Target:  5'- uGGCgGCCGCGGUggCGGcGCUgCagUCCagcgGGCg -3'
miRNA:   3'- -CCG-CGGCGCCG--GCC-CGAgG--AGGa---CCG- -5'
23709 3' -66.4 NC_005261.1 + 85376 0.67 0.399193
Target:  5'- cGCGCCGCcGCCcucGGGCUUCUgguaGGCg -3'
miRNA:   3'- cCGCGGCGcCGG---CCCGAGGAgga-CCG- -5'
23709 3' -66.4 NC_005261.1 + 130419 0.67 0.398396
Target:  5'- cGGCcaggaggagcccgGCCGCGGCgccuaCGuGGuCUCCUacgaCUGGCc -3'
miRNA:   3'- -CCG-------------CGGCGCCG-----GC-CC-GAGGAg---GACCG- -5'
23709 3' -66.4 NC_005261.1 + 113139 0.67 0.396807
Target:  5'- cGCGCgGCGGCUGaacguGGagaucgccgagcgcCUgCUCCUGGCc -3'
miRNA:   3'- cCGCGgCGCCGGC-----CC--------------GAgGAGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 91204 0.67 0.394431
Target:  5'- cGGCGCCGUgcuGGCCGaGGCccacgccaagaucgCCgaCCcGGCg -3'
miRNA:   3'- -CCGCGGCG---CCGGC-CCGa-------------GGa-GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 2791 0.67 0.391277
Target:  5'- gGGCuGCCgccgGCGGCCGGGaggggCCgGGCg -3'
miRNA:   3'- -CCG-CGG----CGCCGGCCCgaggaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 3824 0.67 0.391277
Target:  5'- cGCuGCCGCGGgcCCGGGCg----CUGGCg -3'
miRNA:   3'- cCG-CGGCGCC--GGCCCGaggagGACCG- -5'
23709 3' -66.4 NC_005261.1 + 10252 0.67 0.391277
Target:  5'- cGcCGCCGCgGGCCuGGCgCCUUcugcccugaggaCUGGCg -3'
miRNA:   3'- cC-GCGGCG-CCGGcCCGaGGAG------------GACCG- -5'
23709 3' -66.4 NC_005261.1 + 95744 0.67 0.391277
Target:  5'- cGGCGCCGCcGCCgccgccggGGGCgCCgggagCCUcGCg -3'
miRNA:   3'- -CCGCGGCGcCGG--------CCCGaGGa----GGAcCG- -5'
23709 3' -66.4 NC_005261.1 + 99241 0.67 0.391277
Target:  5'- cGGCGUCGCGcccGCCGGGCcgcguaUCaaacagCCgcaGGCa -3'
miRNA:   3'- -CCGCGGCGC---CGGCCCG------AGga----GGa--CCG- -5'
23709 3' -66.4 NC_005261.1 + 105225 0.67 0.391277
Target:  5'- cGgGCCGCGGCCGcGGCcgugaUCUgcGGCg -3'
miRNA:   3'- cCgCGGCGCCGGC-CCGagg--AGGa-CCG- -5'
23709 3' -66.4 NC_005261.1 + 20353 0.67 0.391277
Target:  5'- cGGCuGCCGCGaGCCGuaCUuaagCCUCaccaUGGCa -3'
miRNA:   3'- -CCG-CGGCGC-CGGCccGA----GGAGg---ACCG- -5'
23709 3' -66.4 NC_005261.1 + 31778 0.67 0.391277
Target:  5'- cGCGCCGCGGugcugcCCGcGGCgcagugcgCCgcgCgCUGGCc -3'
miRNA:   3'- cCGCGGCGCC------GGC-CCGa-------GGa--G-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 134216 0.67 0.391277
Target:  5'- gGGuCGCgGCGGCCGGcaGCgUCggCgUGGCg -3'
miRNA:   3'- -CC-GCGgCGCCGGCC--CG-AGgaGgACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.