miRNA display CGI


Results 101 - 120 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23709 3' -66.4 NC_005261.1 + 31778 0.67 0.391277
Target:  5'- cGCGCCGCGGugcugcCCGcGGCgcagugcgCCgcgCgCUGGCc -3'
miRNA:   3'- cCGCGGCGCC------GGC-CCGa-------GGa--G-GACCG- -5'
23709 3' -66.4 NC_005261.1 + 92787 0.67 0.383465
Target:  5'- gGGC-UCGgGGUCGGGgUCCggucgCCgGGCg -3'
miRNA:   3'- -CCGcGGCgCCGGCCCgAGGa----GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 391 0.67 0.383465
Target:  5'- cGGCgGCgGCGGCgGcGGCagCggUCCUGGUc -3'
miRNA:   3'- -CCG-CGgCGCCGgC-CCGagG--AGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 69507 0.67 0.383465
Target:  5'- -aCGCCgGCGG-CGGGCUgCCggagCUGGCg -3'
miRNA:   3'- ccGCGG-CGCCgGCCCGA-GGag--GACCG- -5'
23709 3' -66.4 NC_005261.1 + 75713 0.67 0.383465
Target:  5'- cGCGCCaCGGUCGacgccaucaccGcGCUgCUCCUGGUg -3'
miRNA:   3'- cCGCGGcGCCGGC-----------C-CGAgGAGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 130582 0.67 0.383465
Target:  5'- aGCGCCGCcG-CGcGGCcCCgcgCCUGGCc -3'
miRNA:   3'- cCGCGGCGcCgGC-CCGaGGa--GGACCG- -5'
23709 3' -66.4 NC_005261.1 + 138062 0.67 0.383465
Target:  5'- cGGCgGCgGCGGCgGcGGCagCggUCCUGGUc -3'
miRNA:   3'- -CCG-CGgCGCCGgC-CCGagG--AGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 51772 0.67 0.375756
Target:  5'- uGGCGCU--GGCCGGcgucGC-CCUgCUGGCc -3'
miRNA:   3'- -CCGCGGcgCCGGCC----CGaGGAgGACCG- -5'
23709 3' -66.4 NC_005261.1 + 4483 0.67 0.375756
Target:  5'- cGGCGCCGCGGCguagccugcgCGGGCcCCagUcGcGCg -3'
miRNA:   3'- -CCGCGGCGCCG----------GCCCGaGGagGaC-CG- -5'
23709 3' -66.4 NC_005261.1 + 3565 0.67 0.375756
Target:  5'- cGGCGCCGCuaaGGCgCGcGcGCUCCaCCgcgucgcgGGCc -3'
miRNA:   3'- -CCGCGGCG---CCG-GC-C-CGAGGaGGa-------CCG- -5'
23709 3' -66.4 NC_005261.1 + 1842 0.67 0.375756
Target:  5'- cGGCGCgCGCGaaggcGCCGGGC-CCgaagacgcgCCgcgaGGCc -3'
miRNA:   3'- -CCGCG-GCGC-----CGGCCCGaGGa--------GGa---CCG- -5'
23709 3' -66.4 NC_005261.1 + 134865 0.67 0.375756
Target:  5'- aGGCGCC-CGcGCCcccgcGGGCcCCUgCUGuGCg -3'
miRNA:   3'- -CCGCGGcGC-CGG-----CCCGaGGAgGAC-CG- -5'
23709 3' -66.4 NC_005261.1 + 124864 0.67 0.373465
Target:  5'- cGGCGUCGUcgccuucgucgucuGGcCCGGGU---UCCUGGCc -3'
miRNA:   3'- -CCGCGGCG--------------CC-GGCCCGaggAGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 12532 0.67 0.373465
Target:  5'- cGCGCCGCcGCCgaauuuauacgcggGGGCcCCgcgCCgGGCa -3'
miRNA:   3'- cCGCGGCGcCGG--------------CCCGaGGa--GGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 43648 0.67 0.371182
Target:  5'- uGGCGCgGCGGUgacgugcucuuCGagucgcccaugcagcGGCUCCacggcgaggUCCUGGCc -3'
miRNA:   3'- -CCGCGgCGCCG-----------GC---------------CCGAGG---------AGGACCG- -5'
23709 3' -66.4 NC_005261.1 + 137808 0.67 0.368154
Target:  5'- cGGCGCCGCccCUGGuGCUCgCggggCUGGCa -3'
miRNA:   3'- -CCGCGGCGccGGCC-CGAG-Gag--GACCG- -5'
23709 3' -66.4 NC_005261.1 + 118495 0.67 0.368154
Target:  5'- cGGCGCUGCGGaCCcuGGCgCCgCUcGGCg -3'
miRNA:   3'- -CCGCGGCGCC-GGc-CCGaGGaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 125 0.67 0.368154
Target:  5'- cGGCGCCGCccCUGGuGCUCgCggggCUGGCa -3'
miRNA:   3'- -CCGCGGCGccGGCC-CGAG-Gag--GACCG- -5'
23709 3' -66.4 NC_005261.1 + 125677 0.67 0.368154
Target:  5'- cGUGCCGCcgaauggguuuGCCGGGCUUggCCcGGCg -3'
miRNA:   3'- cCGCGGCGc----------CGGCCCGAGgaGGaCCG- -5'
23709 3' -66.4 NC_005261.1 + 126133 0.67 0.365893
Target:  5'- aGCGCuCGCGGCaagcuucccgaaaaCGgcGGCUCCUCCaccagaGGCc -3'
miRNA:   3'- cCGCG-GCGCCG--------------GC--CCGAGGAGGa-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.